Gm18857 Pseudogene Detail

Summary

• Symbol
  Gm18857
• Name
  predicted gene, 18857

• Feature Type
  pseudogene
• IDs
  MGI:5011042
  NCBI Gene: 100417836
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:4087952-4091308 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 2.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011042	pseudogene	Chr13:4085245-4104757 (+)
129S1/SvImJ	ENSMUSG00200007077	pseudogene	Chr13:1267191-1286789 (+)
A/J	ENSMUSG00195013283	pseudogene	Chr13:675365-694969 (+)
AKR/J	ENSMUSG00220013148	pseudogene	Chr13:955619-975146 (+)
BALB/cJ	ENSMUSG00180009568	pseudogene	Chr13:1087552-1107142 (+)
C3H/HeJ	ENSMUSG00175008711	pseudogene	Chr13:1107249-1126757 (+)
C57BL/6NJ	ENSMUSG00215017267	pseudogene	Chr13:1327065-1346573 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024830	pseudogene	Chr13:1334713-1354324 (+)
CBA/J	ENSMUSG00210022935	pseudogene	Chr13:645934-665446 (+)
DBA/2J	ENSMUSG00185024537	pseudogene	Chr13:1333687-1353204 (+)
FVB/NJ	ENSMUSG00205027896	pseudogene	Chr13:1089237-1108830 (+)
JF1/MsJ	ENSUMUG00000012871	pseudogene	Chr13:1334645-1354539 (+)
LP/J	ENSMUSG00230007690	pseudogene	Chr13:10807055-10826958 (+)
NOD/ShiLtJ	ENSMUSG00190013074	pseudogene	Chr13:792873-812380 (+)
NZO/HlLtJ	ENSMUSG00225034767	pseudogene	Chr13:4694764-4714648 (+)
PWK/PhJ	ENSLUMG00010017234	pseudogene	Chr13:710252-730066 (+)
SPRET/EiJ	ENSMSPG00010026599	pseudogene	Chr13:749609-769133 (+)
WSB/EiJ	ENSIUOG00005023123	pseudogene	Chr13:681373-707401 (+)

Homology

• Gene Tree
  Gm18857
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000110055 (Evidence)
• NCBI Gene
  100417836

Representative Sequences			Length	Strain/Species
genomic	100417836	NCBI Gene Model | MGI Sequence Detail	3357	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;