Gm18854 Pseudogene Detail

Summary

• Symbol
  Gm18854
• Name
  predicted gene, 18854

• Feature Type
  pseudogene
• IDs
  MGI:5011039
  NCBI Gene: 100417833
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:11759378-11764331 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 7.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  37

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011039	pseudogene	Chr7:11759328-11765123 (+)
129S1/SvImJ	ENSMUSG00200041672	pseudogene	Chr7:5817648-5818096 (+)
A/J	ENSMUSG00195052059	pseudogene	Chr7:5538330-5543276 (+)
A/J	ENSMUSG00195002263	pseudogene	Chr6:71117-76188 (-)
A/J	ENSMUSG00195003049	pseudogene	Chr4:165128-170111 (-)
AKR/J	ENSMUSG00220029764	pseudogene	Chr7:4990576-4996560 (+)
BALB/cJ	ENSMUSG00180051531	pseudogene	Chr7:5497141-5502084 (+)
BALB/cJ	ENSMUSG00180001697	pseudogene	Chr6:164397-169468 (-)
C3H/HeJ	ENSMUSG00175049208	pseudogene	Chr7:5826609-5831561 (+)
C57BL/6NJ	ENSMUSG00215044266	pseudogene	Chr7:6135719-6135735 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027456	pseudogene	Chr6:10528-15565 (-)
CAST/EiJ	ENSTCUG00005026576	pseudogene	Chr13:149322-154349 (-)
CAST/EiJ	ENSTCUG00005029122	pseudogene	Chr7:5604862-5609885 (+)
CBA/J	ENSMUSG00210048053	pseudogene	Chr7:5122941-5127892 (+)
DBA/2J	ENSMUSG00185002890	pseudogene	Chr4:144342-149324 (-)
DBA/2J	ENSMUSG00185026153	pseudogene	Chr13:203500-208516 (-)
DBA/2J	ENSMUSG00185049667	pseudogene	Chr7:8655543-8660494 (+)
DBA/2J	ENSMUSG00185026370	pseudogene	Chr6:167021-172092 (-)
FVB/NJ	ENSMUSG00205048464	pseudogene	Chr7:5851369-5856422 (+)
FVB/NJ	ENSMUSG00205014465	pseudogene	Chr16:207570-212590 (-)
JF1/MsJ	ENSUMUG00000052716	pseudogene	Chr7:8306678-8311700 (+)
JF1/MsJ	ENSUMUG00000014419	pseudogene	Chr6:170994-175858 (-)
JF1/MsJ	ENSUMUG00000003528	pseudogene	Chr4:291542-296520 (-)
JF1/MsJ	ENSUMUG00000013542	pseudogene	Chr13:159585-164650 (-)
LP/J	ENSMUSG00230008734	pseudogene	Chr4:3309511-3314493 (-)
LP/J	ENSMUSG00230048357	pseudogene	Chr7:12838092-12843043 (+)
LP/J	ENSMUSG00230010529	pseudogene	Chr13:9632301-9637362 (-)
LP/J	ENSMUSG00230018276	pseudogene	Chr6:1166717-1171788 (-)
NOD/ShiLtJ	ENSMUSG00190051550	pseudogene	Chr7:5718412-5723465 (+)
NZO/HlLtJ	ENSMUSG00225001002	pseudogene	Chr4:7294129-7299111 (-)
NZO/HlLtJ	ENSMUSG00225035122	pseudogene	Chr13:3519968-3525035 (-)
NZO/HlLtJ	ENSMUSG00225054705	pseudogene	Chr7:10319694-10324650 (+)
NZO/HlLtJ	ENSMUSG00225019568	pseudogene	Chr6:2984894-2989975 (-)
PWK/PhJ	ENSLUMG00010010405	pseudogene	Chr18:197734-202737 (+)
PWK/PhJ	ENSLUMG00010050826	pseudogene	Chr7:9473205-9478290 (+)
SPRET/EiJ	ENSMSPG00010049411	pseudogene	Chr7:5588680-5593952 (+)
WSB/EiJ	ENSIUOG00005053190	pseudogene	Chr7:5772478-5773345 (+)

Homology

• Gene Tree
  Gm18854
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1

• Ensembl
  ENSMUSG00000109758 (Evidence)
• NCBI Gene
  100417833

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109758	Ensembl Gene Model | MGI Sequence Detail	4954	C57BL/6J
transcript	ENSMUST00000211196	Ensembl | MGI Sequence Detail	329	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;