Gm18820 Pseudogene Detail

Summary

• Symbol
  Gm18820
• Name
  predicted gene, 18820

• Feature Type
  pseudogene
• IDs
  MGI:5011005
  NCBI Gene: 100417780
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:31555066-31555953 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 17.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011005	pseudogene	Chr9:31555066-31555981 (+)
129S1/SvImJ	ENSMUSG00200008744	pseudogene	Chr9:28554597-28555512 (+)
A/J	ENSMUSG00195006477	pseudogene	Chr9:28366614-28367529 (+)
AKR/J	ENSMUSG00220010616	pseudogene	Chr9:28396349-28397264 (+)
BALB/cJ	ENSMUSG00180006814	pseudogene	Chr9:28495079-28495994 (+)
C3H/HeJ	ENSMUSG00175019489	pseudogene	Chr9:28475580-28476495 (+)
C57BL/6NJ	ENSMUSG00215009468	pseudogene	Chr9:28451443-28452358 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019126	pseudogene	Chr9:28457448-28458344 (+)
CBA/J	ENSMUSG00210022148	pseudogene	Chr9:28505881-28506796 (+)
DBA/2J	ENSMUSG00185002647	pseudogene	Chr9:28550618-28551533 (+)
FVB/NJ	ENSMUSG00205004446	pseudogene	Chr9:28850038-28850953 (+)
JF1/MsJ	ENSUMUG00000014899	pseudogene	Chr9:28733954-28734852 (+)
LP/J	ENSMUSG00230005335	pseudogene	Chr9:28984913-28985828 (+)
NOD/ShiLtJ	ENSMUSG00190006378	pseudogene	Chr9:28587276-28588191 (+)
NZO/HlLtJ	ENSMUSG00225015018	pseudogene	Chr9:28963828-28964743 (+)
PWK/PhJ	ENSLUMG00010009323	pseudogene	Chr9:28589821-28590719 (+)
SPRET/EiJ	ENSMSPG00010002219	pseudogene	Chr9:28960980-28961887 (+)
WSB/EiJ	ENSIUOG00005016004	pseudogene	Chr9:28028405-28029320 (+)

Homology

• Gene Tree
  Gm18820
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111153 (Evidence)
• NCBI Gene
  100417780

Representative Sequences			Length	Strain/Species
genomic	100417780	NCBI Gene Model | MGI Sequence Detail	888	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;