Gm18780 Pseudogene Detail

Summary

• Symbol
  Gm18780
• Name
  predicted gene, 18780

• Feature Type
  pseudogene
• IDs
  MGI:5010965
  NCBI Gene: 100417718
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:113047553-113048126 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 59.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010965	pseudogene	Chr7:113047547-113048127 (-)
129S1/SvImJ	ENSMUSG00200034426	pseudogene	Chr7:99594444-99595017 (-)
A/J	ENSMUSG00195040902	pseudogene	Chr7:104098915-104099488 (-)
AKR/J	ENSMUSG00220040113	pseudogene	Chr7:97501790-97502363 (-)
BALB/cJ	ENSMUSG00180045459	pseudogene	Chr7:100766951-100767524 (-)
C3H/HeJ	ENSMUSG00175026822	pseudogene	Chr7:101399582-101400155 (-)
C57BL/6NJ	ENSMUSG00215051647	pseudogene	Chr7:100709554-100710127 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044285	pseudogene	Chr7:104085507-104086078 (-)
CBA/J	ENSMUSG00210025018	pseudogene	Chr7:101226523-101227096 (-)
DBA/2J	ENSMUSG00185022740	pseudogene	Chr7:105576727-105577300 (-)
FVB/NJ	ENSMUSG00205050426	pseudogene	Chr7:101186216-101186789 (-)
JF1/MsJ	ENSUMUG00000051155	pseudogene	Chr7:110603936-110604509 (-)
LP/J	ENSMUSG00230038477	pseudogene	Chr7:111680795-111681368 (-)
NOD/ShiLtJ	ENSMUSG00190028089	pseudogene	Chr7:101396639-101397212 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010041925	pseudogene	Chr7:99748449-99749022 (-)
SPRET/EiJ	ENSMSPG00010043586	pseudogene	Chr7:100916256-100916829 (-)
WSB/EiJ	ENSIUOG00005012519	pseudogene	Chr7:102042485-102043058 (-)

Homology

• Gene Tree
  Gm18780
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm18780
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000109779 (Evidence)
• NCBI Gene
  100417718

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109779	Ensembl Gene Model | MGI Sequence Detail	574	C57BL/6J
transcript	ENSMUST00000209594	Ensembl | MGI Sequence Detail	574	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:61682 Hagiwara N, et al., Sox6 is a candidate gene for p100H myopathy, heart block, and sudden neonatal death. Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):4180-5
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67