Rpap3-ps2 Pseudogene Detail

Summary

• Symbol
  Rpap3-ps2
• Name
  RNA polymerase II associated protein 3, pseudogene 2
• Synonyms
  Gm18778

• Feature Type
  pseudogene
• IDs
  MGI:5010963
  NCBI Gene: 100417715
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:13960598-13962758 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 8.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010963	pseudogene	Chr7:13960405-13962758 (-)
129S1/SvImJ	ENSMUSG00200041770	pseudogene	Chr7:8034052-8036210 (-)
A/J	ENSMUSG00195053226	pseudogene	Chr7:7696523-7698683 (-)
AKR/J	ENSMUSG00220027239	pseudogene	Chr7:7076030-7078193 (-)
BALB/cJ	ENSMUSG00180051340	pseudogene	Chr7:7620740-7622899 (-)
C3H/HeJ	ENSMUSG00175051318	pseudogene	Chr7:8085085-8087244 (-)
C57BL/6NJ	ENSMUSG00215045943	pseudogene	Chr7:8315799-8317958 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029976	pseudogene	Chr7:7573650-7575794 (-)
CBA/J	ENSMUSG00210048662	pseudogene	Chr7:7336164-7338322 (-)
DBA/2J	ENSMUSG00185055280	pseudogene	Chr7:10868835-10870994 (-)
FVB/NJ	ENSMUSG00205048618	pseudogene	Chr7:7919270-7921430 (-)
JF1/MsJ	ENSUMUG00000038847	pseudogene	Chr7:10383237-10385394 (-)
LP/J	ENSMUSG00230047651	pseudogene	Chr7:15051217-15053376 (-)
NOD/ShiLtJ	ENSMUSG00190052535	pseudogene	Chr7:11953963-11956124 (-)
NZO/HlLtJ	ENSMUSG00225054293	pseudogene	Chr7:12518909-12521067 (-)
PWK/PhJ	ENSLUMG00010051087	pseudogene	Chr7:11556922-11559077 (-)
SPRET/EiJ	ENSMSPG00010050360	pseudogene	Chr7:7603828-7606547 (-)
WSB/EiJ	ENSIUOG00005053727	pseudogene	Chr7:17230366-17232525 (+)

Homology

• Gene Tree
  Rpap3-ps2
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098354 (Evidence)
• NCBI Gene
  100417715

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098354	Ensembl Gene Model | MGI Sequence Detail	2161	C57BL/6J
transcript	ENSMUST00000184741	Ensembl | MGI Sequence Detail	2161	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;