Gm18770 Pseudogene Detail

Summary

• Symbol
  Gm18770
• Name
  predicted gene, 18770

• Feature Type
  pseudogene
• IDs
  MGI:5010955
  NCBI Gene: 100417701
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:20840078-20840592 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 12.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010955	pseudogene	Chr16:20840078-20840592 (+)
129S1/SvImJ	ENSMUSG00200048069	pseudogene	Chr16:17837821-17838335 (+)
A/J	ENSMUSG00195037116	pseudogene	Chr16:17396064-17396578 (+)
AKR/J	ENSMUSG00220046266	pseudogene	Chr16:17715493-17716007 (+)
BALB/cJ	ENSMUSG00180042601	pseudogene	Chr16:17636656-17637170 (+)
C3H/HeJ	ENSMUSG00175051500	pseudogene	Chr16:17781697-17782211 (+)
C57BL/6NJ	ENSMUSG00215042305	pseudogene	Chr16:17508848-17509362 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046293	pseudogene	Chr16:18107769-18108283 (+)
CBA/J	ENSMUSG00210048135	pseudogene	Chr16:17803412-17803926 (+)
DBA/2J	ENSMUSG00185033972	pseudogene	Chr16:17742160-17742674 (+)
FVB/NJ	ENSMUSG00205048776	pseudogene	Chr16:17742173-17742687 (+)
JF1/MsJ	ENSUMUG00000054360	pseudogene	Chr16:17956526-17957046 (+)
LP/J	ENSMUSG00230033576	pseudogene	Chr16:20321412-20321926 (+)
NOD/ShiLtJ	ENSMUSG00190051400	pseudogene	Chr16:17883701-17884215 (+)
NZO/HlLtJ	ENSMUSG00225038893	pseudogene	Chr16:23572484-23572998 (+)
PWK/PhJ	ENSLUMG00010048913	pseudogene	Chr16:17780376-17780895 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005043718	pseudogene	Chr16:17986570-17987084 (+)

Homology

• Gene Tree
  Gm18770
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000116592 (Evidence)
• NCBI Gene
  100417701

Representative Sequences			Length	Strain/Species
genomic	100417701	NCBI Gene Model | MGI Sequence Detail	515	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;