Gm18738 Pseudogene Detail

Summary

• Symbol
  Gm18738
• Name
  predicted gene, 18738

• Feature Type
  pseudogene
• IDs
  MGI:5010923
  NCBI Gene: 100417649
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:71790387-71790909 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 41.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010923	pseudogene	Chr17:71790364-71790918 (+)
129S1/SvImJ	ENSMUSG00200039697	pseudogene	Chr17:67121254-67121776 (+)
A/J	ENSMUSG00195019482	pseudogene	Chr17:68472601-68473123 (+)
AKR/J	ENSMUSG00220018979	pseudogene	Chr17:67508667-67509189 (+)
BALB/cJ	ENSMUSG00180021961	pseudogene	Chr17:68208767-68209289 (+)
C3H/HeJ	ENSMUSG00175032771	pseudogene	Chr17:67521907-67522429 (+)
C57BL/6NJ	ENSMUSG00215030027	pseudogene	Chr17:67206507-67207029 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027672	pseudogene	Chr17:68051041-68051563 (+)
CBA/J	ENSMUSG00210031090	pseudogene	Chr17:67333942-67334464 (+)
DBA/2J	ENSMUSG00185023740	pseudogene	Chr17:70166897-70167419 (+)
FVB/NJ	ENSMUSG00205019010	pseudogene	Chr17:67981159-67981681 (+)
JF1/MsJ	ENSUMUG00000041333	pseudogene	Chr17:69833547-69834069 (+)
LP/J	ENSMUSG00230016879	pseudogene	Chr17:71126463-71126985 (+)
NOD/ShiLtJ	ENSMUSG00190041704	pseudogene	Chr17:67271682-67272204 (+)
NZO/HlLtJ	ENSMUSG00225029096	pseudogene	Chr17:73405844-73406366 (+)
PWK/PhJ	ENSLUMG00010029749	pseudogene	Chr17:67058930-67059452 (+)
SPRET/EiJ	ENSMSPG00010018718	pseudogene	Chr17:67405232-67405754 (+)
WSB/EiJ	ENSIUOG00005033655	pseudogene	Chr17:68185454-68185976 (+)

Homology

• Gene Tree
  Gm18738
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117107 (Evidence)
• NCBI Gene
  100417649

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117107	Ensembl Gene Model | MGI Sequence Detail	523	C57BL/6J
transcript	ENSMUST00000232895	Ensembl | MGI Sequence Detail	523	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;