Gm18649 Pseudogene Detail

Summary

• Symbol
  Gm18649
• Name
  predicted gene, 18649

• Feature Type
  pseudogene
• IDs
  MGI:5010834
  NCBI Gene: 100417499
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:79059684-79060144 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 49.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010834	pseudogene	Chr17:79059639-79060144 (+)
129S1/SvImJ	ENSMUSG00200025010	pseudogene	Chr17:74432962-74433425 (+)
A/J	ENSMUSG00195028289	pseudogene	Chr17:75787257-75787720 (+)
AKR/J	ENSMUSG00220013890	pseudogene	Chr17:74694888-74695351 (+)
BALB/cJ	ENSMUSG00180005207	pseudogene	Chr17:75497032-75497495 (+)
C3H/HeJ	ENSMUSG00175016670	pseudogene	Chr17:74773082-74773542 (+)
C57BL/6NJ	ENSMUSG00215018047	pseudogene	Chr17:74484859-74485319 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015442	pseudogene	Chr17:75342800-75343263 (+)
CBA/J	ENSMUSG00210020757	pseudogene	Chr17:74636482-74636942 (+)
DBA/2J	ENSMUSG00185013113	pseudogene	Chr17:77469935-77470395 (+)
FVB/NJ	ENSMUSG00205032613	pseudogene	Chr17:75253313-75253776 (+)
JF1/MsJ	ENSUMUG00000022524	pseudogene	Chr17:77165325-77165785 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190010256	pseudogene	Chr17:74537306-74537769 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010005862	pseudogene	Chr17:74403412-74403875 (+)
SPRET/EiJ	ENSMSPG00010008837	pseudogene	Chr17:74879806-74880270 (+)
WSB/EiJ	ENSIUOG00005010665	pseudogene	Chr17:75468415-75468878 (+)

Homology

• Gene Tree
  Gm18649
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000117192 (Evidence)
• NCBI Gene
  100417499

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117192	Ensembl Gene Model | MGI Sequence Detail	461	C57BL/6J
transcript	ENSMUST00000233688	Ensembl | MGI Sequence Detail	461	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;