Gm18618 Pseudogene Detail

Summary

• Symbol
  Gm18618
• Name
  predicted gene, 18618

• Feature Type
  pseudogene
• IDs
  MGI:5010803
  NCBI Gene: 100417456
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:88225683-88226155 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 42.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  61 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010803	pseudogene	Chr12:88225558-88226166 (-)
129S1/SvImJ	ENSMUSG00200050880	pseudogene	Chr12:79977350-79977822 (-)
129S1/SvImJ	ENSMUSG00200050871	pseudogene	Chr12:79825873-79826345 (-)
A/J	ENSMUSG00195034369	pseudogene	Chr12:82636752-82637224 (-)
A/J	ENSMUSG00195034353	pseudogene	Chr12:82485243-82485715 (-)
AKR/J	ENSMUSG00220050669	pseudogene	Chr12:80293766-80294238 (-)
BALB/cJ	ENSMUSG00180016077	pseudogene	Chr12:81797201-81797673 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215046623	pseudogene	Chr12:80981205-80981672 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035278	pseudogene	Chr12:80608682-80609155 (+)
CBA/J	ENSMUSG00210046943	pseudogene	Chr12:81380253-81380725 (-)
CBA/J	ENSMUSG00210046936	pseudogene	Chr12:81228765-81229237 (-)
DBA/2J	ENSMUSG00185002911	pseudogene	Chr12:83232119-83232591 (-)
DBA/2J	ENSMUSG00185002908	pseudogene	Chr12:83080649-83081121 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000052970	pseudogene	Chr12:86961999-86962471 (+)
JF1/MsJ	ENSUMUG00000050489	pseudogene	Chr12:86787428-86787900 (+)
JF1/MsJ	ENSUMUG00000050532	pseudogene	Chr12:87607221-87607693 (-)
JF1/MsJ	ENSUMUG00000053056	pseudogene	Chr12:87288721-87289194 (-)
JF1/MsJ	ENSUMUG00000053618	pseudogene	Chr12:87914230-87914703 (-)
JF1/MsJ	ENSUMUG00000053538	pseudogene	Chr12:87665589-87666061 (-)
JF1/MsJ	ENSUMUG00000053121	pseudogene	Chr12:87474925-87475397 (-)
LP/J	ENSMUSG00230047765	pseudogene	Chr12:90142728-90143200 (-)
LP/J	ENSMUSG00230047534	pseudogene	Chr12:90294197-90294669 (-)
NOD/ShiLtJ	ENSMUSG00190042557	pseudogene	Chr12:104760318-104760790 (+)
NZO/HlLtJ	ENSMUSG00225053142	pseudogene	Chr12:92090119-92090591 (-)
PWK/PhJ	ENSLUMG00010030261	pseudogene	Chr12:80809354-80809826 (+)
PWK/PhJ	ENSLUMG00010003839	pseudogene	Chr12:81240877-81241350 (-)
SPRET/EiJ	ENSMSPG00010001154	pseudogene	Chr12:83778532-83779006 (-)
WSB/EiJ	ENSIUOG00005046681	pseudogene	Chr12:80611972-80612444 (-)

Homology

• Gene Tree
  Gm18618
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm18618
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000113801 (Evidence)
• NCBI Gene
  100417456

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113801	Ensembl Gene Model | MGI Sequence Detail	473	C57BL/6J
transcript	ENSMUST00000222211	Ensembl | MGI Sequence Detail	473	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;