Gm18604 Pseudogene Detail

Summary

• Symbol
  Gm18604
• Name
  predicted gene, 18604

• Feature Type
  pseudogene
• IDs
  MGI:5010789
  NCBI Gene: 100417423
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:36540361-36540918 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 19.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010789	pseudogene	Chr17:36540361-36541217 (+)
129S1/SvImJ	ENSMUSG00200052613	pseudogene	Chr17:32140381-32140846 (+)
A/J	ENSMUSG00195047483	pseudogene	Chr17:33214579-33215249 (+)
AKR/J	ENSMUSG00220052530	pseudogene	Chr17:32015180-32015737 (+)
BALB/cJ	ENSMUSG00180044336	pseudogene	Chr17:32643938-32644495 (+)
C3H/HeJ	ENSMUSG00175042161	pseudogene	Chr17:31900985-31901542 (+)
C57BL/6NJ	ENSMUSG00215053440	pseudogene	Chr17:31970270-31970827 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010174	pseudogene	Chr17:33004927-33005472 (+)
CAST/EiJ	ENSTCUG00005052199	pseudogene	Chr17:33038662-33039219 (+)
CBA/J	ENSMUSG00210052079	pseudogene	Chr17:31722980-31723537 (+)
DBA/2J	ENSMUSG00185054743	pseudogene	Chr17:34663060-34663617 (+)
FVB/NJ	ENSMUSG00205053464	pseudogene	Chr17:32270764-32271434 (+)
JF1/MsJ	ENSUMUG00000057307	pseudogene	Chr17:33567450-33568072 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190054005	pseudogene	Chr17:31889849-31890519 (+)
NZO/HlLtJ	ENSMUSG00225054990	pseudogene	Chr17:37726976-37727533 (+)
PWK/PhJ	ENSLUMG00010046066	pseudogene	Chr17:31458789-31459346 (+)
SPRET/EiJ	ENSMSPG00010050691	pseudogene	Chr17:32772532-32773076 (+)
WSB/EiJ	ENSIUOG00005051983	pseudogene	Chr17:32670166-32670709 (+)

Homology

• Gene Tree
  Gm18604
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm18604
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000092612 (Evidence)
• NCBI Gene
  100417423

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092612	Ensembl Gene Model | MGI Sequence Detail	558	C57BL/6J
transcript	ENSMUST00000172535	Ensembl | MGI Sequence Detail	558	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53