Gm18589 Pseudogene Detail

Summary

• Symbol
  Gm18589
• Name
  predicted gene, 18589

• Feature Type
  pseudogene
• IDs
  MGI:5010774
  NCBI Gene: 100417396
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:154545271-154557291 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 79.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  425 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010774	pseudogene	Chr3:154543474-154559331 (+)
129S1/SvImJ	ENSMUSG00200004040	pseudogene	Chr3:151516068-151526017 (+)
A/J	ENSMUSG00195003523	pseudogene	Chr3:151632182-151642010 (+)
AKR/J	ENSMUSG00220000473	pseudogene	Chr3:150045215-150055162 (+)
BALB/cJ	ENSMUSG00180027252	pseudogene	Chr3:151484041-151493874 (+)
C3H/HeJ	ENSMUSG00175020132	pseudogene	Chr3:151100638-151110468 (+)
C57BL/6NJ	ENSMUSG00215004442	pseudogene	Chr3:151744763-151754707 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001464	pseudogene	Chr3:152170944-152180804 (+)
CBA/J	ENSMUSG00210005016	pseudogene	Chr3:151741761-151751706 (+)
DBA/2J	ENSMUSG00185000164	pseudogene	Chr3:152370213-152380041 (+)
FVB/NJ	ENSMUSG00205009387	pseudogene	Chr3:150676680-150687019 (+)
JF1/MsJ	ENSUMUG00000036755	pseudogene	Chr3:151125737-151135323 (+)
LP/J	ENSMUSG00230009680	pseudogene	Chr3:154265078-154275027 (+)
NOD/ShiLtJ	ENSMUSG00190007572	pseudogene	Chr3:152723847-152733675 (+)
NZO/HlLtJ	ENSMUSG00225006178	pseudogene	Chr3:156764778-156774606 (+)
PWK/PhJ	ENSLUMG00010001883	pseudogene	Chr3:151070452-151080319 (+)
SPRET/EiJ	ENSMSPG00010000304	pseudogene	Chr3:152407589-152416613 (+)
WSB/EiJ	ENSIUOG00005015663	pseudogene	Chr3:151852064-151862013 (+)

Homology

• Gene Tree
  Gm18589
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118443 (Evidence)
• NCBI Gene
  100417396

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118443	Ensembl Gene Model | MGI Sequence Detail	12021	C57BL/6J
transcript	ENSMUST00000238360	Ensembl | MGI Sequence Detail	3611	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;