Gm18550 Pseudogene Detail

Summary

• Symbol
  Gm18550
• Name
  predicted gene, 18550

• Feature Type
  pseudogene
• IDs
  MGI:5010735
  NCBI Gene: 100417348
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:71654145-71655126 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 40.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010735	pseudogene	Chr16:71654145-71655140 (+)
129S1/SvImJ	ENSMUSG00200008526	pseudogene	Chr16:68518083-68519064 (+)
A/J	ENSMUSG00195001623	pseudogene	Chr16:68268452-68269433 (+)
AKR/J	ENSMUSG00220005732	pseudogene	Chr16:68453452-68454433 (+)
BALB/cJ	ENSMUSG00180001689	pseudogene	Chr16:68367130-68368111 (+)
C3H/HeJ	ENSMUSG00175004657	pseudogene	Chr16:68638718-68639699 (+)
C57BL/6NJ	ENSMUSG00215014942	pseudogene	Chr16:68497261-68498242 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012739	pseudogene	Chr16:68445867-68446848 (+)
CBA/J	ENSMUSG00210015266	pseudogene	Chr16:68596028-68597009 (+)
DBA/2J	ENSMUSG00185004617	pseudogene	Chr16:68531999-68532980 (+)
FVB/NJ	ENSMUSG00205011947	pseudogene	Chr16:68276829-68277810 (+)
JF1/MsJ	ENSUMUG00000015629	pseudogene	Chr16:68760120-68761101 (+)
LP/J	ENSMUSG00230007359	pseudogene	Chr16:71097305-71098286 (+)
NOD/ShiLtJ	ENSMUSG00190016859	pseudogene	Chr16:68509574-68510555 (+)
NZO/HlLtJ	ENSMUSG00225029741	pseudogene	Chr16:74333253-74334234 (+)
PWK/PhJ	ENSLUMG00010011665	pseudogene	Chr16:68450276-68451257 (+)
SPRET/EiJ	ENSMSPG00010002133	pseudogene	Chr16:69173165-69174146 (+)
WSB/EiJ	ENSIUOG00005002318	pseudogene	Chr16:68524590-68525572 (+)

Homology

• Gene Tree
  Gm18550
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm18550
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116966 (Evidence)
• NCBI Gene
  100417348

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116966	Ensembl Gene Model | MGI Sequence Detail	982	C57BL/6J
transcript	ENSMUST00000232273	Ensembl | MGI Sequence Detail	982	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76