Gm18547 Pseudogene Detail

Summary

• Symbol
  Gm18547
• Name
  predicted gene, 18547

• Feature Type
  pseudogene
• IDs
  MGI:5010732
  NCBI Gene: 100417344
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:10898522-10899331 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 8.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010732	pseudogene	Chr2:10898520-10899331 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011522	pseudogene	Chr2:8266014-8266824 (+)
A/J	MGP_AJ_G0011516	pseudogene	Chr2:7924211-7925021 (+)
AKR/J	MGP_AKRJ_G0011481	pseudogene	Chr2:8184467-8185277 (+)
BALB/cJ	MGP_BALBcJ_G0011496	pseudogene	Chr2:7899931-7900741 (+)
C3H/HeJ	MGP_C3HHeJ_G0011382	pseudogene	Chr2:8119070-8119880 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011787	pseudogene	Chr2:8475750-8476560 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010330	pseudogene	Chr2:7392995-7393830 (+)
CAST/EiJ	MGP_CASTEiJ_G0011183	pseudogene	Chr2:8146616-8147426 (+)
CBA/J	MGP_CBAJ_G0011354	pseudogene	Chr2:8828510-8829320 (+)
DBA/2J	MGP_DBA2J_G0011411	pseudogene	Chr2:7843643-7844453 (+)
FVB/NJ	MGP_FVBNJ_G0011415	pseudogene	Chr2:7772582-7773392 (+)
LP/J	MGP_LPJ_G0011478	pseudogene	Chr2:8183464-8184274 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011411	pseudogene	Chr2:8761800-8762610 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011774	pseudogene	Chr2:8117152-8117962 (+)
PWK/PhJ	MGP_PWKPhJ_G0011040	pseudogene	Chr2:7808034-7808844 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010868	pseudogene	Chr2:8096076-8096886 (+)
WSB/EiJ	MGP_WSBEiJ_G0011206	pseudogene	Chr2:8209408-8210218 (+)

Homology

• Gene Tree
  Gm18547
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000103237 (Evidence)
• NCBI Gene
  100417344

Representative Sequences			Length	Strain/Species
genomic	100417344	NCBI Gene Model | MGI Sequence Detail	810	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm18547:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16097	Chr2:10898086-10898094 (+)	-432 bp