Gm18530 Pseudogene Detail

Summary

• Symbol
  Gm18530
• Name
  predicted gene, 18530

• Feature Type
  pseudogene
• IDs
  MGI:5010715
  NCBI Gene: 100417319
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:41772859-41773882 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 21.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010715	pseudogene	Chr18:41772852-41773888 (+)
129S1/SvImJ	ENSMUSG00200045166	pseudogene	Chr18:38795498-38796514 (+)
A/J	ENSMUSG00195039350	pseudogene	Chr18:38948023-38949039 (+)
AKR/J	ENSMUSG00220017448	pseudogene	Chr18:38912457-38913473 (+)
BALB/cJ	ENSMUSG00180021517	pseudogene	Chr18:39393481-39394497 (+)
C3H/HeJ	ENSMUSG00175043530	pseudogene	Chr18:38894598-38895614 (+)
C57BL/6NJ	ENSMUSG00215030677	pseudogene	Chr18:38645503-38646526 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024307	pseudogene	Chr18:38502803-38503819 (+)
CBA/J	ENSMUSG00210021701	pseudogene	Chr18:38959339-38960355 (+)
DBA/2J	ENSMUSG00185021498	pseudogene	Chr18:38868076-38869092 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000048153	pseudogene	Chr18:38998148-38999169 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190023277	pseudogene	Chr18:38657903-38658919 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010013269	pseudogene	Chr18:39157780-39158801 (+)
SPRET/EiJ	ENSMSPG00010023531	pseudogene	Chr18:39268682-39269705 (+)
WSB/EiJ	ENSIUOG00005008165	pseudogene	Chr18:38642349-38643372 (+)

Homology

• Gene Tree
  Gm18530
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000117708 (Evidence)
• NCBI Gene
  100417319

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117708	Ensembl Gene Model | MGI Sequence Detail	1024	C57BL/6J
transcript	ENSMUST00000237940	Ensembl | MGI Sequence Detail	1024	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;