Gm18529 Pseudogene Detail

Summary

• Symbol
  Gm18529
• Name
  predicted gene, 18529

• Feature Type
  pseudogene
• IDs
  MGI:5010714
  NCBI Gene: 100417318
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:37438588-37439585 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010714	pseudogene	Chr18:37438588-37439844 (+)
129S1/SvImJ	ENSMUSG00200045215	pseudogene	Chr18:34436916-34438179 (+)
A/J	ENSMUSG00195038651	pseudogene	Chr18:34589933-34591197 (+)
AKR/J	ENSMUSG00220017216	pseudogene	Chr18:34580033-34581296 (+)
BALB/cJ	ENSMUSG00180021584	pseudogene	Chr18:35039564-35040828 (+)
C3H/HeJ	ENSMUSG00175040612	pseudogene	Chr18:34561560-34562823 (+)
C57BL/6NJ	ENSMUSG00215027760	pseudogene	Chr18:34308105-34309361 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010257	pseudogene	Chr18:34551589-34552878 (+)
CAST/EiJ	ENSTCUG00005024080	pseudogene	Chr18:34185849-34187106 (+)
CBA/J	ENSMUSG00210021638	pseudogene	Chr18:34581570-34582834 (+)
DBA/2J	ENSMUSG00185021647	pseudogene	Chr18:34516217-34517481 (+)
FVB/NJ	ENSMUSG00205036761	pseudogene	Chr18:34241829-34243092 (+)
JF1/MsJ	ENSUMUG00000049429	pseudogene	Chr18:34658058-34659315 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190022422	pseudogene	Chr18:34309882-34311145 (+)
NZO/HlLtJ	ENSMUSG00225047571	pseudogene	Chr18:36531652-36532915 (+)
PWK/PhJ	ENSLUMG00010013634	pseudogene	Chr18:34823829-34825085 (+)
SPRET/EiJ	ENSMSPG00010024279	pseudogene	Chr18:34871642-34872908 (+)
WSB/EiJ	ENSIUOG00005008715	pseudogene	Chr18:34295186-34296450 (+)

Homology

• Gene Tree
  Gm18529
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Endonuclease-mediated
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm18529
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104264 (Evidence)
• NCBI Gene
  100417318

Representative Sequences			Length	Strain/Species
genomic	100417318	NCBI Gene Model | MGI Sequence Detail	998	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)