Gm18494 Pseudogene Detail

Summary

• Symbol
  Gm18494
• Name
  predicted gene, 18494

• Feature Type
  pseudogene
• IDs
  MGI:5010679
  NCBI Gene: 100417269
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:75132440-75133569 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010679	pseudogene	Chr2:75132416-75133569 (-)
129S1/SvImJ	ENSMUSG00200004313	pseudogene	Chr2:72176998-72178151 (-)
A/J	ENSMUSG00195019877	pseudogene	Chr2:72323766-72324919 (-)
AKR/J	ENSMUSG00220002377	pseudogene	Chr2:72288432-72289585 (-)
BALB/cJ	ENSMUSG00180006975	pseudogene	Chr2:72277431-72278584 (-)
C3H/HeJ	ENSMUSG00175011121	pseudogene	Chr2:72400770-72401923 (-)
C57BL/6NJ	ENSMUSG00215029998	pseudogene	Chr2:72244640-72245793 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031043	pseudogene	Chr2:71721922-71723075 (-)
CBA/J	ENSMUSG00210002506	pseudogene	Chr2:72443414-72444567 (-)
DBA/2J	ENSMUSG00185011832	pseudogene	Chr2:72279271-72280424 (-)
FVB/NJ	ENSMUSG00205018883	pseudogene	Chr2:71733773-71734926 (-)
JF1/MsJ	ENSUMUG00000044261	pseudogene	Chr2:71961468-71962621 (-)
LP/J	ENSMUSG00230027522	pseudogene	Chr2:74082139-74083292 (-)
NOD/ShiLtJ	ENSMUSG00190011037	pseudogene	Chr2:72354246-72355399 (-)
NZO/HlLtJ	ENSMUSG00225015701	pseudogene	Chr2:81845033-81846186 (-)
PWK/PhJ	ENSLUMG00010033359	pseudogene	Chr2:72199135-72200288 (-)
SPRET/EiJ	ENSMSPG00010023717	pseudogene	Chr2:73592170-73593315 (-)
WSB/EiJ	ENSIUOG00005011485	pseudogene	Chr2:72400513-72401666 (-)

Homology

• Gene Tree
  Gm18494
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm18494
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000115959 (Evidence)
• NCBI Gene
  100417269

Representative Sequences			Length	Strain/Species
genomic	100417269	NCBI Gene Model | MGI Sequence Detail	1130	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:308920 Bolt CC, et al., Mesomelic dysplasias associated with the HOXD locus are caused by regulatory reallocations. Nat Commun. 2021 Aug 18;12(1):5013