Gm18488 Pseudogene Detail

Summary

• Symbol
  Gm18488
• Name
  predicted gene, 18488

• Feature Type
  pseudogene
• IDs
  MGI:5010673
  NCBI Gene: 100417262
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:11014455-11014818 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 2.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010673	pseudogene	Chr9:11014450-11015388 (+)
129S1/SvImJ	ENSMUSG00200022913	pseudogene	Chr9:7889253-7889616 (+)
A/J	ENSMUSG00195019287	pseudogene	Chr9:7783874-7784237 (+)
AKR/J	ENSMUSG00220018796	pseudogene	Chr9:7746891-7747254 (+)
BALB/cJ	ENSMUSG00180011664	pseudogene	Chr9:7916186-7916549 (+)
C3H/HeJ	ENSMUSG00175024671	pseudogene	Chr9:7858922-7859285 (+)
C57BL/6NJ	ENSMUSG00215007210	pseudogene	Chr9:7854298-7854661 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007412	pseudogene	Chr9:7865141-7865504 (+)
CBA/J	ENSMUSG00210010851	pseudogene	Chr9:7901062-7901425 (+)
DBA/2J	ENSMUSG00185005170	pseudogene	Chr9:7984007-7984370 (+)
FVB/NJ	ENSMUSG00205007256	pseudogene	Chr9:7945088-7945451 (+)
JF1/MsJ	ENSUMUG00000008616	pseudogene	Chr9:7991175-7991538 (+)
LP/J	ENSMUSG00230004558	pseudogene	Chr9:8411949-8412312 (+)
NOD/ShiLtJ	ENSMUSG00190022731	pseudogene	Chr9:7892252-7892615 (+)
NZO/HlLtJ	ENSMUSG00225017249	pseudogene	Chr9:8323517-8323880 (+)
PWK/PhJ	ENSLUMG00010006573	pseudogene	Chr9:7950838-7951201 (+)
SPRET/EiJ	ENSMSPG00010005730	pseudogene	Chr9:8050734-8051097 (+)
WSB/EiJ	ENSIUOG00005007858	pseudogene	Chr9:7627533-7627896 (+)

Homology

• Gene Tree
  Gm18488
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111568 (Evidence)
• NCBI Gene
  100417262

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111568	Ensembl Gene Model | MGI Sequence Detail	364	C57BL/6J
transcript	ENSMUST00000215082	Ensembl | MGI Sequence Detail	364	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;