Gm18405 Pseudogene Detail

Summary

• Symbol
  Gm18405
• Name
  predicted gene, 18405

• Feature Type
  pseudogene
• IDs
  MGI:5010590
  NCBI Gene: 100417119
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:108957067-108957577 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 59.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010590	pseudogene	Chr12:108956857-108957601 (-)
129S1/SvImJ	ENSMUSG00200028741	pseudogene	Chr12:100730407-100730917 (-)
A/J	ENSMUSG00195045660	pseudogene	Chr12:103291185-103291695 (-)
AKR/J	ENSMUSG00220043792	pseudogene	Chr12:101173730-101174240 (-)
BALB/cJ	ENSMUSG00180049601	pseudogene	Chr12:102493503-102494013 (-)
C3H/HeJ	ENSMUSG00175040232	pseudogene	Chr12:105101709-105102219 (-)
C57BL/6NJ	ENSMUSG00215050461	pseudogene	Chr12:101766447-101766957 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019386	pseudogene	Chr12:101246886-101247396 (-)
CBA/J	ENSMUSG00210035980	pseudogene	Chr12:102163205-102163715 (-)
DBA/2J	ENSMUSG00185029443	pseudogene	Chr12:103950501-103951011 (-)
FVB/NJ	ENSMUSG00205019094	pseudogene	Chr12:101180996-101181506 (-)
JF1/MsJ	ENSUMUG00000025792	pseudogene	Chr12:108706158-108706668 (-)
LP/J	ENSMUSG00230031542	pseudogene	Chr12:110995336-110995846 (-)
NOD/ShiLtJ	ENSMUSG00190038395	pseudogene	Chr12:84051365-84051875 (+)
NZO/HlLtJ	ENSMUSG00225039368	pseudogene	Chr12:112754040-112754550 (-)
PWK/PhJ	ENSLUMG00010045182	pseudogene	Chr12:102185091-102185601 (-)
SPRET/EiJ	ENSMSPG00010018516	pseudogene	Chr12:104485152-104485662 (-)
WSB/EiJ	ENSIUOG00005009693	pseudogene	Chr12:101182289-101182799 (-)

Homology

• Gene Tree
  Gm18405
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000113478 (Evidence)
• NCBI Gene
  100417119

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113478	Ensembl Gene Model | MGI Sequence Detail	511	C57BL/6J
transcript	ENSMUST00000220743	Ensembl | MGI Sequence Detail	511	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;