Gm18398 Pseudogene Detail

Summary

• Symbol
  Gm18398
• Name
  predicted gene, 18398

• Feature Type
  pseudogene
• IDs
  MGI:5010583
  NCBI Gene: 100417103
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:27436334-27437834 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 16.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010583	pseudogene	Chr14:27436334-27437901 (+)
129S1/SvImJ	ENSMUSG00200015790	pseudogene	Chr14:19246914-19248414 (+)
A/J	ENSMUSG00195023103	pseudogene	Chr14:20313869-20315352 (+)
AKR/J	ENSMUSG00220029075	pseudogene	Chr14:19417875-19419358 (+)
BALB/cJ	ENSMUSG00180042123	pseudogene	Chr14:19405757-19407240 (+)
C3H/HeJ	ENSMUSG00175024029	pseudogene	Chr14:19473212-19474695 (+)
C57BL/6NJ	ENSMUSG00215034989	pseudogene	Chr14:19717888-19719388 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034778	pseudogene	Chr14:19570600-19572100 (+)
CBA/J	ENSMUSG00210027641	pseudogene	Chr14:19708091-19709574 (+)
DBA/2J	ENSMUSG00185043002	pseudogene	Chr14:24000209-24001709 (+)
FVB/NJ	ENSMUSG00205041681	pseudogene	Chr14:19535946-19537429 (+)
JF1/MsJ	ENSUMUG00000051535	pseudogene	Chr14:31258183-31259684 (+)
LP/J	ENSMUSG00230039884	pseudogene	Chr14:31275824-31277324 (+)
NOD/ShiLtJ	ENSMUSG00190039556	pseudogene	Chr14:19725468-19726951 (+)
NZO/HlLtJ	ENSMUSG00225037801	pseudogene	Chr14:25602904-25604404 (+)
PWK/PhJ	ENSLUMG00010022515	pseudogene	Chr14:7850891-7852392 (+)
SPRET/EiJ	ENSMSPG00010044621	pseudogene	Chr14:21356833-21358333 (+)
WSB/EiJ	ENSIUOG00005034379	pseudogene	Chr14:19555565-19557065 (+)

Homology

• Gene Tree
  Gm18398
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114653 (Evidence)
• NCBI Gene
  100417103

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114653	Ensembl Gene Model | MGI Sequence Detail	1501	C57BL/6J
transcript	ENSMUST00000224481	Ensembl | MGI Sequence Detail	1501	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;