Obox3-ps7 Pseudogene Detail

Summary

• Symbol
  Obox3-ps7
• Name
  oocyte specific homeobox 3, pseudogene 7
• Synonyms
  Gm18355

• Feature Type
  pseudogene
• IDs
  MGI:5010540
  NCBI Gene: 100417000
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:14367964-14368498 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 8.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010540	pseudogene	Chr7:14367964-14368509 (+)
129S1/SvImJ	ENSMUSG00200042713	pseudogene	Chr7:8453536-8454070 (+)
A/J	ENSMUSG00195052742	pseudogene	Chr7:8062873-8063407 (+)
AKR/J	ENSMUSG00220027917	pseudogene	Chr7:7501334-7501868 (+)
BALB/cJ	ENSMUSG00180050750	pseudogene	Chr7:8034969-8035503 (+)
C3H/HeJ	ENSMUSG00175050561	pseudogene	Chr7:8499322-8499856 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029405	pseudogene	Chr7:7924629-7925163 (+)
CBA/J	ENSMUSG00210049634	pseudogene	Chr7:7750348-7750882 (+)
DBA/2J	ENSMUSG00185054844	pseudogene	Chr7:11283092-11283626 (+)
FVB/NJ	ENSMUSG00205046948	pseudogene	Chr7:8320999-8321533 (+)
JF1/MsJ	ENSUMUG00000044708	pseudogene	Chr7:10743944-10744478 (+)
LP/J	ENSMUSG00230047776	pseudogene	Chr7:15465428-15465962 (+)
NOD/ShiLtJ	ENSMUSG00190052040	pseudogene	Chr7:12355794-12356328 (+)
NZO/HlLtJ	ENSMUSG00225054322	pseudogene	Chr7:12926386-12926920 (+)
PWK/PhJ	ENSLUMG00010050972	pseudogene	Chr7:11913737-11914271 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005053708	pseudogene	Chr7:16823083-16823617 (-)

Homology

• Gene Tree
  Obox3-ps7
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Obox3-ps7
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000093773 (Evidence)
• NCBI Gene
  100417000

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093773	Ensembl Gene Model | MGI Sequence Detail	535	C57BL/6J
transcript	ENSMUST00000176465	Ensembl | MGI Sequence Detail	410	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:340071 Ji S, et al., OBOX regulates mouse zygotic genome activation and early development. Nature. 2023 Aug;620(7976):1047-1053