Gm18343 Pseudogene Detail

Summary

• Symbol
  Gm18343
• Name
  predicted gene, 18343

• Feature Type
  pseudogene
• IDs
  MGI:5010528
  NCBI Gene: 100416974
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:25655303-25655906 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 12.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010528	pseudogene	Chr5:25655296-25655906 (+)
129S1/SvImJ	ENSMUSG00200014661	pseudogene	Chr5:21258591-21259193 (+)
A/J	ENSMUSG00195050015	pseudogene	Chr5:20721009-20721610 (+)
AKR/J	ENSMUSG00220009579	pseudogene	Chr5:20814530-20815131 (+)
BALB/cJ	ENSMUSG00180025402	pseudogene	Chr5:20601118-20601721 (+)
C3H/HeJ	ENSMUSG00175050539	pseudogene	Chr5:22524564-22525163 (+)
C3H/HeJ	ENSMUSG00175048090	pseudogene	Chr5:22529771-22530372 (+)
C57BL/6NJ	ENSMUSG00215042157	pseudogene	Chr5:21174605-21175208 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011537	pseudogene	Chr5:20341943-20342545 (+)
CAST/EiJ	ENSTCUG00005024716	pseudogene	Chr5:20728062-20728663 (+)
CBA/J	ENSMUSG00210048899	pseudogene	Chr5:21558437-21559038 (+)
DBA/2J	ENSMUSG00185037938	pseudogene	Chr5:23089035-23089638 (+)
FVB/NJ	ENSMUSG00205034620	pseudogene	Chr5:20373818-20374421 (+)
JF1/MsJ	ENSUMUG00000007056	pseudogene	Chr5:27656866-27657467 (+)
LP/J	ENSMUSG00230025686	pseudogene	Chr5:27540562-27541164 (+)
NOD/ShiLtJ	ENSMUSG00190015816	pseudogene	Chr5:20646017-20646620 (+)
NZO/HlLtJ	ENSMUSG00225020481	pseudogene	Chr5:32942389-32942992 (+)
PWK/PhJ	ENSLUMG00010048493	pseudogene	Chr5:20697347-20697948 (+)
SPRET/EiJ	ENSMSPG00010043593	pseudogene	Chr5:21565606-21566196 (+)
WSB/EiJ	ENSIUOG00005043836	pseudogene	Chr5:23456123-23456726 (+)

Homology

• Gene Tree
  Gm18343
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm18343
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000092510 (Evidence)
• NCBI Gene
  100416974

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092510	Ensembl Gene Model | MGI Sequence Detail	604	C57BL/6J
transcript	ENSMUST00000172802	Ensembl | MGI Sequence Detail	604	Not Applicable

References

• Summaries
  All 15

  Diseases 1

  Phenotypes 11
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:119563 Alt B, et al., Arteries define the position of the thyroid gland during its developmental relocalisation. Development. 2006 Oct;133(19):3797-804