Gm18339 Pseudogene Detail

Summary

• Symbol
  Gm18339
• Name
  predicted gene, 18339

• Feature Type
  pseudogene
• IDs
  MGI:5010524
  NCBI Gene: 100416961
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:56713756-56714643 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 24.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010524	pseudogene	Chr12:56713756-56714643 (+)
129S1/SvImJ	ENSMUSG00200031198	pseudogene	Chr12:48636028-48636928 (+)
A/J	ENSMUSG00195001775	pseudogene	Chr12:51194268-51195155 (+)
AKR/J	ENSMUSG00220027710	pseudogene	Chr12:49212729-49213616 (+)
BALB/cJ	ENSMUSG00180006139	pseudogene	Chr12:50215195-50216082 (+)
C3H/HeJ	ENSMUSG00175016956	pseudogene	Chr12:53256272-53257159 (+)
C57BL/6NJ	ENSMUSG00215017602	pseudogene	Chr12:49557804-49558691 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009452	pseudogene	Chr12:49654435-49655322 (+)
CBA/J	ENSMUSG00210010141	pseudogene	Chr12:49730559-49731446 (+)
DBA/2J	ENSMUSG00185001346	pseudogene	Chr12:51675830-51676717 (+)
FVB/NJ	ENSMUSG00205014509	pseudogene	Chr12:49529899-49530799 (+)
JF1/MsJ	ENSUMUG00000008511	pseudogene	Chr12:55761751-55762636 (+)
LP/J	ENSMUSG00230016032	pseudogene	Chr12:58712911-58713811 (+)
NOD/ShiLtJ	ENSMUSG00190017083	pseudogene	Chr12:48724237-48725124 (+)
NZO/HlLtJ	ENSMUSG00225041015	pseudogene	Chr12:60848179-60849066 (+)
PWK/PhJ	ENSLUMG00010016882	pseudogene	Chr12:49803601-49804486 (+)
SPRET/EiJ	ENSMSPG00010011177	pseudogene	Chr12:51304087-51304975 (+)
WSB/EiJ	ENSIUOG00005003797	pseudogene	Chr12:49565771-49566666 (+)

Homology

• Gene Tree
  Gm18339
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm18339
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112886 (Evidence)
• NCBI Gene
  100416961

Representative Sequences			Length	Strain/Species
genomic	100416961	NCBI Gene Model | MGI Sequence Detail	888	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;