Gm18334 Pseudogene Detail

Summary

• Symbol
  Gm18334
• Name
  predicted gene, 18334

• Feature Type
  pseudogene
• IDs
  MGI:5010519
  NCBI Gene: 100416953
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:15917464-15917973 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 10.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010519	pseudogene	Chr16:15917462-15917975 (+)
129S1/SvImJ	ENSMUSG00200047529	pseudogene	Chr16:12913920-12914433 (+)
A/J	ENSMUSG00195035130	pseudogene	Chr16:12470808-12471321 (+)
AKR/J	ENSMUSG00220046595	pseudogene	Chr16:12783405-12783918 (+)
BALB/cJ	ENSMUSG00180043427	pseudogene	Chr16:12712181-12712694 (+)
C3H/HeJ	ENSMUSG00175050183	pseudogene	Chr16:12857159-12857672 (+)
C57BL/6NJ	ENSMUSG00215042460	pseudogene	Chr16:12578279-12578792 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046530	pseudogene	Chr16:12744003-12744516 (+)
CBA/J	ENSMUSG00210048041	pseudogene	Chr16:12873505-12874018 (+)
DBA/2J	ENSMUSG00185036228	pseudogene	Chr16:12819632-12820145 (+)
FVB/NJ	ENSMUSG00205046533	pseudogene	Chr16:12829003-12829516 (+)
JF1/MsJ	ENSUMUG00000053219	pseudogene	Chr16:12870773-12871286 (+)
LP/J	ENSMUSG00230046018	pseudogene	Chr16:15397587-15398100 (+)
NOD/ShiLtJ	ENSMUSG00190051524	pseudogene	Chr16:12959611-12960124 (+)
NZO/HlLtJ	ENSMUSG00225032255	pseudogene	Chr16:18643369-18643882 (+)
PWK/PhJ	ENSLUMG00010050333	pseudogene	Chr16:12759050-12759563 (+)
SPRET/EiJ	ENSMSPG00010047913	pseudogene	Chr16:12782426-12782939 (+)
WSB/EiJ	ENSIUOG00005043265	pseudogene	Chr16:12925406-12925919 (+)

Homology

• Gene Tree
  Gm18334
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116385 (Evidence)
• NCBI Gene
  100416953

Representative Sequences			Length	Strain/Species
genomic	100416953	NCBI Gene Model | MGI Sequence Detail	510	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;