Gm18273 Pseudogene Detail

Summary

• Symbol
  Gm18273
• Name
  predicted gene, 18273

• Feature Type
  pseudogene
• IDs
  MGI:5010458
  NCBI Gene: 100416814
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:33083623-33084871 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  248 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010458	pseudogene	Chr17:33083573-33085274 (+)
129S1/SvImJ	ENSMUSG00200054266	pseudogene	Chr17:28747165-28760475 (+)
A/J	ENSMUSG00195054651	pseudogene	Chr17:29686174-29699533 (+)
AKR/J	ENSMUSG00220053547	pseudogene	Chr17:28714246-28727605 (+)
BALB/cJ	ENSMUSG00180050067	pseudogene	Chr17:29021292-29034601 (+)
C3H/HeJ	ENSMUSG00175053951	pseudogene	Chr17:28595262-28608620 (+)
C57BL/6NJ	ENSMUSG00215054407	pseudogene	Chr17:28592261-28605570 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051072	pseudogene	Chr17:29609477-29622899 (+)
CBA/J	ENSMUSG00210051122	pseudogene	Chr17:28422209-28435567 (+)
DBA/2J	ENSMUSG00185054323	pseudogene	Chr17:31033222-31046531 (+)
FVB/NJ	ENSMUSG00205053623	pseudogene	Chr17:28918813-28932104 (+)
JF1/MsJ	ENSUMUG00000057924	pseudogene	Chr17:30330824-30343845 (+)
LP/J	ENSMUSG00230054676	pseudogene	Chr17:32145622-32158931 (+)
NOD/ShiLtJ	ENSMUSG00190054270	pseudogene	Chr17:28533248-28546538 (+)
NZO/HlLtJ	ENSMUSG00225054927	pseudogene	Chr17:34182624-34195933 (+)
PWK/PhJ	ENSLUMG00010053415	pseudogene	Chr17:28174955-28188677 (+)
SPRET/EiJ	ENSMSPG00010050330	pseudogene	Chr17:29273343-29286685 (+)
WSB/EiJ	ENSIUOG00005051765	pseudogene	Chr17:29327700-29341075 (+)

Homology

• Gene Tree
  Gm18273
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117373 (Evidence)
• NCBI Gene
  100416814

Representative Sequences			Length	Strain/Species
genomic	100416814	NCBI Gene Model | MGI Sequence Detail	1249	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;