Gm18223 Pseudogene Detail

Summary

• Symbol
  Gm18223
• Name
  predicted gene, 18223

• Feature Type
  pseudogene
• IDs
  MGI:5010408
  NCBI Gene: 100416744
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:118463846-118464667 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 55.86 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010408	pseudogene	Chr6:118463414-118465391 (+)
129S1/SvImJ	ENSMUSG00200051097	pseudogene	Chr6:115671543-115673512 (+)
A/J	ENSMUSG00195048554	pseudogene	Chr6:115071503-115073480 (+)
AKR/J	ENSMUSG00220035209	pseudogene	Chr6:113957664-113959633 (+)
BALB/cJ	ENSMUSG00180050069	pseudogene	Chr6:115439192-115441169 (+)
C3H/HeJ	ENSMUSG00175036229	pseudogene	Chr6:62028968-62030945 (-)
C57BL/6NJ	ENSMUSG00215049799	pseudogene	Chr6:115429326-115431303 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210046692	pseudogene	Chr6:115206398-115208375 (+)
DBA/2J	ENSMUSG00185048365	pseudogene	Chr6:115869614-115871583 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230049249	pseudogene	Chr6:117069031-117071000 (+)
NOD/ShiLtJ	ENSMUSG00190050305	pseudogene	Chr6:114828882-114830851 (+)
NZO/HlLtJ	ENSMUSG00225047650	pseudogene	Chr6:118924671-118926648 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005044394	pseudogene	Chr6:115490206-115492183 (+)

Homology

• Gene Tree
  Gm18223
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000118520 (Evidence)
• NCBI Gene
  100416744

Representative Sequences			Length	Strain/Species
genomic	100416744	NCBI Gene Model | MGI Sequence Detail	822	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;