Gm18101 Pseudogene Detail

Summary

• Symbol
  Gm18101
• Name
  predicted gene, 18101

• Feature Type
  pseudogene
• IDs
  MGI:5010286
  NCBI Gene: 100416409
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:120584044-120584591 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 71.85 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010286	pseudogene	Chr9:120584044-120584592 (-)
129S1/SvImJ	ENSMUSG00200032464	pseudogene	Chr9:117707000-117707548 (-)
A/J	ENSMUSG00195028255	pseudogene	Chr9:116882158-116882707 (-)
AKR/J	ENSMUSG00220019804	pseudogene	Chr9:117343491-117344039 (-)
BALB/cJ	ENSMUSG00180030101	pseudogene	Chr9:117419393-117419943 (-)
C3H/HeJ	ENSMUSG00175020156	pseudogene	Chr9:117662673-117663221 (-)
C57BL/6NJ	ENSMUSG00215033288	pseudogene	Chr9:117538045-117538594 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017089	pseudogene	Chr9:117280159-117280649 (-)
CBA/J	ENSMUSG00210040944	pseudogene	Chr9:117382306-117382853 (-)
DBA/2J	ENSMUSG00185017940	pseudogene	Chr9:117716532-117717080 (-)
FVB/NJ	ENSMUSG00205032152	pseudogene	Chr9:117550886-117551435 (-)
JF1/MsJ	ENSUMUG00000052059	pseudogene	Chr9:117565078-117565621 (-)
LP/J	ENSMUSG00230038043	pseudogene	Chr9:117835254-117835801 (-)
NOD/ShiLtJ	ENSMUSG00190015011	pseudogene	Chr9:117316423-117316970 (-)
NZO/HlLtJ	ENSMUSG00225023790	pseudogene	Chr9:118099585-118100132 (-)
PWK/PhJ	ENSLUMG00010038160	pseudogene	Chr9:117450514-117451056 (-)
SPRET/EiJ	ENSMSPG00010026262	pseudogene	Chr9:119148258-119148807 (-)
WSB/EiJ	ENSIUOG00005022012	pseudogene	Chr9:116755692-116756246 (-)

Homology

• Gene Tree
  Gm18101
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000110726 (Evidence)
• NCBI Gene
  100416409

Representative Sequences			Length	Strain/Species
genomic	100416409	NCBI Gene Model | MGI Sequence Detail	548	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm18101:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92030	Chr9:120584682-120584710 (-)	-105 bp