Gm18089 Pseudogene Detail

Summary

• Symbol
  Gm18089
• Name
  predicted gene, 18089

• Feature Type
  pseudogene
• IDs
  MGI:5010274
  NCBI Gene: 100416384
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:27141725-27142354 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 15.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010274	pseudogene	Chr18:27141725-27142381 (+)
129S1/SvImJ	ENSMUSG00200016349	pseudogene	Chr18:24147891-24148546 (+)
A/J	ENSMUSG00195002441	pseudogene	Chr18:24307465-24308120 (+)
AKR/J	ENSMUSG00220011383	pseudogene	Chr18:24299883-24300537 (+)
BALB/cJ	ENSMUSG00180003549	pseudogene	Chr18:24747709-24748363 (+)
C3H/HeJ	ENSMUSG00175024514	pseudogene	Chr18:24282105-24282758 (+)
C57BL/6NJ	ENSMUSG00215021558	pseudogene	Chr18:23999369-24000023 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016478	pseudogene	Chr18:23944672-23945332 (+)
CBA/J	ENSMUSG00210016130	pseudogene	Chr18:24298134-24298788 (+)
DBA/2J	ENSMUSG00185023245	pseudogene	Chr18:24246261-24246915 (+)
FVB/NJ	ENSMUSG00205024414	pseudogene	Chr18:23966923-23967577 (+)
JF1/MsJ	ENSUMUG00000028345	pseudogene	Chr18:24338057-24338717 (+)
LP/J	ENSMUSG00230006096	pseudogene	Chr18:26341999-26342653 (+)
NOD/ShiLtJ	ENSMUSG00190006984	pseudogene	Chr18:24058107-24058761 (+)
NZO/HlLtJ	ENSMUSG00225025585	pseudogene	Chr18:26294774-26295428 (+)
PWK/PhJ	ENSLUMG00010003790	pseudogene	Chr18:24521559-24522224 (+)
SPRET/EiJ	ENSMSPG00010022694	pseudogene	Chr18:24444972-24445617 (+)
WSB/EiJ	ENSIUOG00005002849	pseudogene	Chr18:24070626-24071280 (+)

Homology

• Gene Tree
  Gm18089
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117516 (Evidence)
• NCBI Gene
  100416384

Representative Sequences			Length	Strain/Species
genomic	100416384	NCBI Gene Model | MGI Sequence Detail	630	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;