Gm18087 Pseudogene Detail

Summary

• Symbol
  Gm18087
• Name
  predicted gene, 18087

• Feature Type
  pseudogene
• IDs
  MGI:5010272
  NCBI Gene: 100416382
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:57048434-57049160 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 31.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010272	pseudogene	Chr18:57048432-57049161 (-)
129S1/SvImJ	ENSMUSG00200033886	pseudogene	Chr18:54142655-54143381 (-)
A/J	ENSMUSG00195005686	pseudogene	Chr18:54262216-54262942 (-)
AKR/J	ENSMUSG00220016418	pseudogene	Chr18:54252333-54253059 (-)
BALB/cJ	ENSMUSG00180012568	pseudogene	Chr18:54836524-54837250 (-)
C3H/HeJ	ENSMUSG00175037696	pseudogene	Chr18:54455530-54456256 (-)
C57BL/6NJ	ENSMUSG00215039808	pseudogene	Chr18:53776863-53777589 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027832	pseudogene	Chr18:53659645-53660373 (-)
CBA/J	ENSMUSG00210033123	pseudogene	Chr18:54393016-54393742 (-)
DBA/2J	ENSMUSG00185015629	pseudogene	Chr18:54307620-54308346 (-)
FVB/NJ	ENSMUSG00205017791	pseudogene	Chr18:53761948-53762675 (-)
JF1/MsJ	ENSUMUG00000036908	pseudogene	Chr18:54198066-54198792 (-)
LP/J	ENSMUSG00230011800	pseudogene	Chr18:56316131-56316857 (-)
NOD/ShiLtJ	ENSMUSG00190036153	pseudogene	Chr18:54019137-54019863 (-)
NZO/HlLtJ	ENSMUSG00225035504	pseudogene	Chr18:56179386-56180112 (-)
PWK/PhJ	ENSLUMG00010008597	pseudogene	Chr18:54342067-54342793 (-)
SPRET/EiJ	ENSMSPG00010019324	pseudogene	Chr18:54722309-54723040 (-)
WSB/EiJ	ENSIUOG00005009349	pseudogene	Chr18:53936930-53937656 (-)

Homology

• Gene Tree
  Gm18087
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm18087
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117917 (Evidence)
• NCBI Gene
  100416382

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117917	Ensembl Gene Model | MGI Sequence Detail	727	C57BL/6J
transcript	ENSMUST00000237269	Ensembl | MGI Sequence Detail	727	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67