Gm18085 Pseudogene Detail

Summary

• Symbol
  Gm18085
• Name
  predicted gene, 18085

• Feature Type
  pseudogene
• IDs
  MGI:5010270
  NCBI Gene: 100416380
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:24214147-24214981 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 12.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010270	pseudogene	Chr18:24214078-24215057 (-)
129S1/SvImJ	ENSMUSG00200016499	pseudogene	Chr18:21211203-21212037 (-)
A/J	ENSMUSG00195002478	pseudogene	Chr18:21369786-21370620 (-)
AKR/J	ENSMUSG00220011789	pseudogene	Chr18:21366046-21366880 (-)
BALB/cJ	ENSMUSG00180003531	pseudogene	Chr18:21819114-21819948 (-)
C3H/HeJ	ENSMUSG00175023897	pseudogene	Chr18:21326862-21327696 (-)
C57BL/6NJ	ENSMUSG00215024157	pseudogene	Chr18:21070919-21071753 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016325	pseudogene	Chr18:21062457-21063291 (-)
CBA/J	ENSMUSG00210016228	pseudogene	Chr18:21368713-21369547 (-)
DBA/2J	ENSMUSG00185022646	pseudogene	Chr18:21316658-21317492 (-)
FVB/NJ	ENSMUSG00205023400	pseudogene	Chr18:21040357-21041191 (-)
JF1/MsJ	ENSUMUG00000027353	pseudogene	Chr18:21422470-21423304 (-)
LP/J	ENSMUSG00230006349	pseudogene	Chr18:23407130-23407964 (-)
NOD/ShiLtJ	ENSMUSG00190006968	pseudogene	Chr18:21128417-21129251 (-)
NZO/HlLtJ	ENSMUSG00225025769	pseudogene	Chr18:23350117-23350951 (-)
PWK/PhJ	ENSLUMG00010003685	pseudogene	Chr18:21604230-21605064 (-)
SPRET/EiJ	ENSMSPG00010022266	pseudogene	Chr18:21539349-21540188 (-)
WSB/EiJ	ENSIUOG00005002748	pseudogene	Chr18:21139860-21140694 (-)

Homology

• Gene Tree
  Gm18085
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117500 (Evidence)
• NCBI Gene
  100416380

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117500	Ensembl Gene Model | MGI Sequence Detail	835	C57BL/6J
transcript	ENSMUST00000234749	Ensembl | MGI Sequence Detail	835	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;