Gm18080 Pseudogene Detail

Summary

• Symbol
  Gm18080
• Name
  predicted gene, 18080

• Feature Type
  pseudogene
• IDs
  MGI:5010265
  NCBI Gene: 100416374
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:58477678-58478291 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 30.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010265	pseudogene	Chr14:58477642-58478291 (+)
129S1/SvImJ	ENSMUSG00200042949	pseudogene	Chr14:47062990-47063603 (+)
A/J	ENSMUSG00195037089	pseudogene	Chr14:47278250-47278863 (+)
AKR/J	ENSMUSG00220031202	pseudogene	Chr14:46605228-46605841 (+)
BALB/cJ	ENSMUSG00180052559	pseudogene	Chr14:46900287-46900900 (+)
C3H/HeJ	ENSMUSG00175051120	pseudogene	Chr14:48606757-48607370 (+)
C57BL/6NJ	ENSMUSG00215049906	pseudogene	Chr14:46800935-46801548 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050535	pseudogene	Chr14:48609487-48610100 (+)
CBA/J	ENSMUSG00210049097	pseudogene	Chr14:47268596-47269209 (+)
DBA/2J	ENSMUSG00185034366	pseudogene	Chr14:52404943-52405556 (+)
FVB/NJ	ENSMUSG00205043000	pseudogene	Chr14:46670649-46671262 (+)
JF1/MsJ	ENSUMUG00000046589	pseudogene	Chr14:63578504-63579117 (+)
LP/J	ENSMUSG00230037325	pseudogene	Chr14:64431969-64432582 (+)
NOD/ShiLtJ	ENSMUSG00190051546	pseudogene	Chr14:47034905-47035518 (+)
NZO/HlLtJ	ENSMUSG00225047456	pseudogene	Chr14:54725244-54725857 (+)
PWK/PhJ	ENSLUMG00010049464	pseudogene	Chr14:46494101-46494714 (+)
SPRET/EiJ	ENSMSPG00010047735	pseudogene	Chr14:50014202-50014815 (+)
WSB/EiJ	ENSIUOG00005046626	pseudogene	Chr14:46458886-46459499 (+)

Homology

• Gene Tree
  Gm18080
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm18080
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114562 (Evidence)
• NCBI Gene
  100416374

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114562	Ensembl Gene Model | MGI Sequence Detail	614	C57BL/6J
transcript	ENSMUST00000226080	Ensembl | MGI Sequence Detail	614	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;