Gm18079 Pseudogene Detail

Summary

• Symbol
  Gm18079
• Name
  predicted gene, 18079

• Feature Type
  pseudogene
• IDs
  MGI:5010264
  NCBI Gene: 100416373
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:28446332-28447216 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 16.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010264	pseudogene	Chr14:28446284-28447283 (+)
129S1/SvImJ	ENSMUSG00200038726	pseudogene	Chr14:20264549-20265433 (+)
A/J	ENSMUSG00195015128	pseudogene	Chr14:21336300-21337184 (+)
AKR/J	ENSMUSG00220038264	pseudogene	Chr14:20450851-20451735 (+)
BALB/cJ	ENSMUSG00180042212	pseudogene	Chr14:20424977-20425861 (+)
C3H/HeJ	ENSMUSG00175043542	pseudogene	Chr14:20492366-20493250 (+)
C57BL/6NJ	ENSMUSG00215034684	pseudogene	Chr14:20736375-20737259 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025531	pseudogene	Chr14:20580098-20580982 (+)
CBA/J	ENSMUSG00210045872	pseudogene	Chr14:20735361-20736245 (+)
DBA/2J	ENSMUSG00185043313	pseudogene	Chr14:25010468-25011352 (+)
FVB/NJ	ENSMUSG00205040005	pseudogene	Chr14:20557685-20558569 (+)
JF1/MsJ	ENSUMUG00000051667	pseudogene	Chr14:32273330-32274214 (+)
LP/J	ENSMUSG00230038293	pseudogene	Chr14:32293336-32294220 (+)
NOD/ShiLtJ	ENSMUSG00190020234	pseudogene	Chr14:20743418-20744302 (+)
NZO/HlLtJ	ENSMUSG00225038264	pseudogene	Chr14:26623721-26624605 (+)
PWK/PhJ	ENSLUMG00010022950	pseudogene	Chr14:8873310-8874194 (+)
SPRET/EiJ	ENSMSPG00010043196	pseudogene	Chr14:22368387-22369271 (+)
WSB/EiJ	ENSIUOG00005012745	pseudogene	Chr14:20577778-20578662 (+)

Homology

• Gene Tree
  Gm18079
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114201 (Evidence)
• NCBI Gene
  100416373

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114201	Ensembl Gene Model | MGI Sequence Detail	885	C57BL/6J
transcript	ENSMUST00000224587	Ensembl | MGI Sequence Detail	885	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;