Gm18001 Pseudogene Detail

Summary

• Symbol
  Gm18001
• Name
  predicted gene, 18001

• Feature Type
  pseudogene
• IDs
  MGI:5010186
  NCBI Gene: 100416247
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:84326642-84327329 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 40.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010186	pseudogene	Chr8:84326570-84327413 (+)
129S1/SvImJ	ENSMUSG00200027065	pseudogene	Chr8:78698192-78698878 (+)
A/J	ENSMUSG00195019983	pseudogene	Chr8:79055854-79056540 (+)
AKR/J	ENSMUSG00220023575	pseudogene	Chr8:79095665-79096351 (+)
BALB/cJ	ENSMUSG00180022513	pseudogene	Chr8:78896874-78897560 (+)
C3H/HeJ	ENSMUSG00175011779	pseudogene	Chr8:78986757-78987443 (+)
C57BL/6NJ	ENSMUSG00215021283	pseudogene	Chr8:78620734-78621421 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037168	pseudogene	Chr8:78503844-78504530 (+)
CBA/J	ENSMUSG00210020306	pseudogene	Chr8:78979055-78979741 (+)
DBA/2J	ENSMUSG00185038181	pseudogene	Chr8:85087864-85088550 (+)
FVB/NJ	ENSMUSG00205038473	pseudogene	Chr8:78032301-78032988 (+)
JF1/MsJ	ENSUMUG00000041422	pseudogene	Chr8:87377022-87377709 (+)
LP/J	ENSMUSG00230030279	pseudogene	Chr8:88695116-88695802 (+)
NOD/ShiLtJ	ENSMUSG00190033136	pseudogene	Chr8:79046842-79047536 (+)
NZO/HlLtJ	ENSMUSG00225040836	pseudogene	Chr8:92081894-92082581 (+)
PWK/PhJ	ENSLUMG00010029764	pseudogene	Chr8:78736326-78737012 (+)
SPRET/EiJ	ENSMSPG00010025001	pseudogene	Chr8:80640691-80641374 (+)
WSB/EiJ	ENSIUOG00005016179	pseudogene	Chr8:79788962-79789656 (+)

Homology

• Gene Tree
  Gm18001
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm18001
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000110690 (Evidence)
• NCBI Gene
  100416247

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110690	Ensembl Gene Model | MGI Sequence Detail	688	C57BL/6J
transcript	ENSMUST00000212023	Ensembl | MGI Sequence Detail	688	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;