Stambp-ps2 Pseudogene Detail

Summary

• Symbol
  Stambp-ps2
• Name
  STAM binding protein, pseudogene 2
• Synonyms
  Gm17998, Stambp-ps1

• Feature Type
  pseudogene
• IDs
  MGI:5010183
  NCBI Gene: 100416243
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:61245893-61246731 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 30.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010183	pseudogene	Chr8:61245255-61246731 (+)
129S1/SvImJ	ENSMUSG00200007585	pseudogene	Chr8:56060432-56061649 (+)
A/J	ENSMUSG00195012319	pseudogene	Chr8:56420317-56421534 (+)
AKR/J	ENSMUSG00220006487	pseudogene	Chr8:56234245-56235452 (+)
BALB/cJ	ENSMUSG00180014349	pseudogene	Chr8:56032747-56033954 (+)
C3H/HeJ	ENSMUSG00175007979	pseudogene	Chr8:56237247-56238454 (+)
C57BL/6NJ	ENSMUSG00215011483	pseudogene	Chr8:56064922-56066129 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006745	pseudogene	Chr8:55929007-55930225 (+)
CBA/J	ENSMUSG00210009612	pseudogene	Chr8:56139086-56140293 (+)
DBA/2J	ENSMUSG00185022880	pseudogene	Chr8:62192030-62193237 (+)
FVB/NJ	ENSMUSG00205013790	pseudogene	Chr8:55462343-55463550 (+)
JF1/MsJ	ENSUMUG00000015482	pseudogene	Chr8:64511007-64512215 (+)
LP/J	ENSMUSG00230007020	pseudogene	Chr8:65850692-65851899 (+)
NOD/ShiLtJ	ENSMUSG00190009965	pseudogene	Chr8:56025701-56026918 (+)
NZO/HlLtJ	ENSMUSG00225031234	pseudogene	Chr8:69286728-69287935 (+)
PWK/PhJ	ENSLUMG00010013553	pseudogene	Chr8:55940002-55941210 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005017837	pseudogene	Chr8:56947770-56948987 (+)

Homology

• Gene Tree
  Stambp-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Stambp-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000109797 (Evidence)
• NCBI Gene
  100416243

Representative Sequences			Length	Strain/Species
genomic	100416243	NCBI Gene Model | MGI Sequence Detail	839	C57BL/6J

Other
Accession IDs

MGI:6281739

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:255070 Watanabe T, et al., Retrotransposons and pseudogenes regulate mRNAs and lncRNAs via the piRNA pathway in the germline. Genome Res. 2015 Mar;25(3):368-80