Gm17980 Pseudogene Detail

Summary

• Symbol
  Gm17980
• Name
  predicted gene, 17980

• Feature Type
  pseudogene
• IDs
  MGI:5010165
  NCBI Gene: 100416224
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:88106745-88109093 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010165	pseudogene	Chr10:88106623-88109112 (-)
129S1/SvImJ	ENSMUSG00200030446	pseudogene	Chr10:84604674-84607022 (-)
A/J	ENSMUSG00195023203	pseudogene	Chr10:85049050-85051398 (-)
AKR/J	ENSMUSG00220022207	pseudogene	Chr10:84655579-84657927 (-)
BALB/cJ	ENSMUSG00180035629	pseudogene	Chr10:85052105-85054453 (-)
C3H/HeJ	ENSMUSG00175022572	pseudogene	Chr10:84942542-84944890 (-)
C57BL/6NJ	ENSMUSG00215034458	pseudogene	Chr10:84607291-84609639 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036022	pseudogene	Chr10:84313400-84315750 (-)
CBA/J	ENSMUSG00210037753	pseudogene	Chr10:84782993-84785341 (-)
DBA/2J	ENSMUSG00185044980	pseudogene	Chr10:85008791-85011139 (-)
FVB/NJ	ENSMUSG00205023153	pseudogene	Chr10:84630474-84632822 (-)
JF1/MsJ	ENSUMUG00000030720	pseudogene	Chr10:86338829-86341175 (-)
LP/J	ENSMUSG00230018169	pseudogene	Chr10:86887040-86889388 (-)
NOD/ShiLtJ	ENSMUSG00190019832	pseudogene	Chr10:85034327-85036675 (-)
NZO/HlLtJ	ENSMUSG00225053480	pseudogene	Chr10:91157640-91159988 (-)
PWK/PhJ	ENSLUMG00010023301	pseudogene	Chr10:84631051-84633397 (-)
SPRET/EiJ	ENSMSPG00010035720	pseudogene	Chr10:86127959-86130182 (-)
WSB/EiJ	ENSIUOG00005039165	pseudogene	Chr10:84720346-84722694 (-)

Homology

• Gene Tree
  Gm17980
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Transposon induced
  1
• Genomic Mutations
  2 involving Gm17980
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112259 (Evidence)
• NCBI Gene
  100416224

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112259	Ensembl Gene Model | MGI Sequence Detail	2349	C57BL/6J
transcript	ENSMUST00000217977	Ensembl | MGI Sequence Detail	2349	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87