Gm17977 Pseudogene Detail

Summary

• Symbol
  Gm17977
• Name
  predicted gene, 17977

• Feature Type
  pseudogene
• IDs
  MGI:5010162
  NCBI Gene: 100416221
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:58057076-58057649 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 31.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010162	pseudogene	Chr5:58057054-58057719 (+)
129S1/SvImJ	ENSMUSG00200000142	pseudogene	Chr5:53613118-53613691 (+)
A/J	ENSMUSG00195000510	pseudogene	Chr5:53000198-53000771 (+)
AKR/J	ENSMUSG00220007238	pseudogene	Chr5:53065797-53066370 (+)
BALB/cJ	ENSMUSG00180006716	pseudogene	Chr5:52773335-52773908 (+)
C3H/HeJ	ENSMUSG00175001786	pseudogene	Chr5:54801492-54802065 (+)
C57BL/6NJ	ENSMUSG00215002874	pseudogene	Chr5:53559594-53560167 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036882	pseudogene	Chr5:51883069-51883651 (+)
CAST/EiJ	ENSTCUG00005000718	pseudogene	Chr5:52889315-52889892 (+)
CBA/J	ENSMUSG00210000291	pseudogene	Chr5:53760063-53760636 (+)
DBA/2J	ENSMUSG00185000215	pseudogene	Chr5:55622438-55623011 (+)
FVB/NJ	ENSMUSG00205011800	pseudogene	Chr5:52609741-52610314 (+)
JF1/MsJ	ENSUMUG00000001042	pseudogene	Chr5:60191882-60192455 (+)
LP/J	ENSMUSG00230010891	pseudogene	Chr5:60285076-60285649 (+)
NOD/ShiLtJ	ENSMUSG00190000672	pseudogene	Chr5:52691216-52691789 (+)
NZO/HlLtJ	ENSMUSG00225002932	pseudogene	Chr5:65409418-65409991 (+)
PWK/PhJ	ENSLUMG00010004467	pseudogene	Chr5:52807048-52807621 (+)
SPRET/EiJ	ENSMSPG00010004158	pseudogene	Chr5:54440923-54441496 (+)
WSB/EiJ	ENSIUOG00005000153	pseudogene	Chr5:55633982-55634556 (+)

Homology

• Gene Tree
  Gm17977
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm17977
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000104564 (Evidence)
• NCBI Gene
  100416221

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104564	Ensembl Gene Model | MGI Sequence Detail	574	C57BL/6J
transcript	ENSMUST00000198743	Ensembl | MGI Sequence Detail	574	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17