Gm17944 Pseudogene Detail

Summary

• Symbol
  Gm17944
• Name
  predicted gene, 17944

• Feature Type
  pseudogene
• IDs
  MGI:5010129
  NCBI Gene: 100416155
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:89915305-89915938 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 47.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010129	pseudogene	Chr9:89915296-89915938 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014204	pseudogene	Chr9:90959991-90960637 (+)
A/J	MGP_AJ_G0014221	pseudogene	Chr9:87820948-87821594 (+)
AKR/J	MGP_AKRJ_G0014147	pseudogene	Chr9:89884294-89884940 (+)
BALB/cJ	MGP_BALBcJ_G0014171	pseudogene	Chr9:87471411-87472057 (+)
C3H/HeJ	MGP_C3HHeJ_G0014003	pseudogene	Chr9:90332914-90333560 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014621	pseudogene	Chr9:93504000-93504642 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013659	pseudogene	Chr9:90114852-90115554 (+)
CBA/J	MGP_CBAJ_G0013985	pseudogene	Chr9:96736151-96736793 (+)
DBA/2J	MGP_DBA2J_G0014069	pseudogene	Chr9:87368358-87369000 (+)
FVB/NJ	MGP_FVBNJ_G0014068	pseudogene	Chr9:86395763-86396405 (+)
LP/J	MGP_LPJ_G0014154	pseudogene	Chr9:91189073-91189719 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014101	pseudogene	Chr9:98351368-98352010 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014592	pseudogene	Chr9:90105970-90106612 (+)
PWK/PhJ	MGP_PWKPhJ_G0013473	pseudogene	Chr9:87548795-87549437 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013262	pseudogene	Chr9:90183987-90184643 (+)
WSB/EiJ	MGP_WSBEiJ_G0013718	pseudogene	Chr9:89993690-89994336 (+)

Homology

• Gene Tree
  Gm17944
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm17944
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000100060 (Evidence)
• NCBI Gene
  100416155

Representative Sequences			Length	Strain/Species
genomic	100416155	NCBI Gene Model | MGI Sequence Detail	634	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;