Gm17938 Pseudogene Detail

Summary

• Symbol
  Gm17938
• Name
  predicted gene, 17938

• Feature Type
  pseudogene
• IDs
  MGI:5010123
  NCBI Gene: 100416142
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:67237549-67238194 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 34.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010123	pseudogene	Chr13:67237539-67238289 (+)
129S1/SvImJ	ENSMUSG00200014132	pseudogene	Chr13:62036398-62037042 (+)
A/J	ENSMUSG00195030323	pseudogene	Chr13:62292133-62292778 (+)
AKR/J	ENSMUSG00220039178	pseudogene	Chr13:61272069-61272713 (+)
BALB/cJ	ENSMUSG00180027012	pseudogene	Chr13:62771537-62772182 (+)
C3H/HeJ	ENSMUSG00175009000	pseudogene	Chr13:63082860-63083505 (+)
C57BL/6NJ	ENSMUSG00215012422	pseudogene	Chr13:62763658-62764303 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012172	pseudogene	Chr13:62788086-62788730 (+)
CBA/J	ENSMUSG00210009436	pseudogene	Chr13:62405225-62405870 (+)
DBA/2J	ENSMUSG00185008890	pseudogene	Chr13:66100833-66101478 (+)
FVB/NJ	ENSMUSG00205025656	pseudogene	Chr13:61825329-61825974 (+)
JF1/MsJ	ENSUMUG00000039654	pseudogene	Chr13:65757540-65758185 (+)
LP/J	ENSMUSG00230034671	pseudogene	Chr13:76214536-76215181 (+)
NOD/ShiLtJ	ENSMUSG00190041071	pseudogene	Chr13:62387543-62388188 (+)
NZO/HlLtJ	ENSMUSG00225047200	pseudogene	Chr13:68512148-68512793 (+)
PWK/PhJ	ENSLUMG00010011969	pseudogene	Chr13:61893857-61894502 (+)
SPRET/EiJ	ENSMSPG00010031496	pseudogene	Chr13:62683937-62684582 (+)
WSB/EiJ	ENSIUOG00005022699	pseudogene	Chr13:61572503-61573148 (+)

Homology

• Gene Tree
  Gm17938
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm17938
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114603 (Evidence)
• NCBI Gene
  100416142

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114603	Ensembl Gene Model | MGI Sequence Detail	646	C57BL/6J
transcript	ENSMUST00000225725	Ensembl | MGI Sequence Detail	646	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69