Gm17936 Pseudogene Detail

Summary

• Symbol
  Gm17936
• Name
  predicted gene, 17936

• Feature Type
  pseudogene
• IDs
  MGI:5010121
  NCBI Gene: 100416138
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:8962974-8963954 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 3.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010121	pseudogene	Chr5:8962971-8963958 (+)
129S1/SvImJ	ENSMUSG00200002734	pseudogene	Chr5:5660104-5661091 (+)
A/J	ENSMUSG00195012839	pseudogene	Chr5:5670855-5671842 (+)
AKR/J	ENSMUSG00220002382	pseudogene	Chr5:5574064-5575052 (+)
BALB/cJ	ENSMUSG00180017702	pseudogene	Chr5:5422991-5423978 (+)
C3H/HeJ	ENSMUSG00175028316	pseudogene	Chr5:5598213-5599200 (+)
C57BL/6NJ	ENSMUSG00215024650	pseudogene	Chr5:5879809-5880796 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001759	pseudogene	Chr5:5766242-5767229 (+)
CBA/J	ENSMUSG00210002715	pseudogene	Chr5:5964425-5965412 (+)
DBA/2J	ENSMUSG00185029092	pseudogene	Chr5:5966586-5967573 (+)
FVB/NJ	ENSMUSG00205008049	pseudogene	Chr5:5673955-5674942 (+)
JF1/MsJ	ENSUMUG00000003426	pseudogene	Chr5:6007702-6008690 (+)
LP/J	ENSMUSG00230003584	pseudogene	Chr5:9917545-9918532 (+)
NOD/ShiLtJ	ENSMUSG00190012758	pseudogene	Chr5:5485730-5486718 (+)
NZO/HlLtJ	ENSMUSG00225008853	pseudogene	Chr5:13652945-13653932 (+)
PWK/PhJ	ENSLUMG00010019580	pseudogene	Chr5:5900580-5901568 (+)
SPRET/EiJ	ENSMSPG00010005042	pseudogene	Chr5:5827463-5828470 (+)
WSB/EiJ	ENSIUOG00005026652	pseudogene	Chr5:5679797-5680784 (+)

Homology

• Gene Tree
  Gm17936
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000106664 (Evidence)
• NCBI Gene
  100416138

Representative Sequences			Length	Strain/Species
genomic	100416138	NCBI Gene Model | MGI Sequence Detail	981	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm17936:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45143	Chr5:8962759-8962763 (+)	-213 bp