Gm17928 Pseudogene Detail

Summary

• Symbol
  Gm17928
• Name
  predicted gene, 17928

• Feature Type
  pseudogene
• IDs
  MGI:5010113
  NCBI Gene: 100416122
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:44712659-44713333 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 29.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010113	pseudogene	Chr16:44712656-44713333 (+)
129S1/SvImJ	ENSMUSG00200021667	pseudogene	Chr16:41618715-41619389 (+)
A/J	ENSMUSG00195003609	pseudogene	Chr16:41203862-41204536 (+)
AKR/J	ENSMUSG00220022835	pseudogene	Chr16:41569057-41569732 (+)
BALB/cJ	ENSMUSG00180029503	pseudogene	Chr16:41410292-41410966 (+)
C3H/HeJ	ENSMUSG00175026094	pseudogene	Chr16:41680802-41681476 (+)
C57BL/6NJ	ENSMUSG00215008481	pseudogene	Chr16:41493504-41494178 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012878	pseudogene	Chr16:41914948-41915622 (+)
CBA/J	ENSMUSG00210016942	pseudogene	Chr16:41703520-41704194 (+)
DBA/2J	ENSMUSG00185011221	pseudogene	Chr16:41590016-41590690 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000030579	pseudogene	Chr16:41820796-41821470 (+)
LP/J	ENSMUSG00230029783	pseudogene	Chr16:44172687-44173361 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225028932	pseudogene	Chr16:47264356-47265030 (+)
PWK/PhJ	ENSLUMG00010028417	pseudogene	Chr16:41695084-41695758 (+)
SPRET/EiJ	ENSMSPG00010007693	pseudogene	Chr16:41860233-41860907 (+)
WSB/EiJ	ENSIUOG00005013620	pseudogene	Chr16:41785259-41785933 (+)

Homology

• Gene Tree
  Gm17928
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000116820 (Evidence)
• NCBI Gene
  100416122

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116820	Ensembl Gene Model | MGI Sequence Detail	675	C57BL/6J
transcript	ENSMUST00000231755	Ensembl | MGI Sequence Detail	564	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;