Prdx1-ps Pseudogene Detail

Summary

• Symbol
  Prdx1-ps
• Name
  peroxiredoxin 1, pseudogene 1
• Synonyms
  Gm17924

• Feature Type
  pseudogene
• IDs
  MGI:5010109
  NCBI Gene: 100416115
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:64353016-64353593 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 37.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010109	pseudogene	Chr18:64353006-64353593 (-)
129S1/SvImJ	ENSMUSG00200025093	pseudogene	Chr18:61534227-61534814 (-)
A/J	ENSMUSG00195032785	pseudogene	Chr18:61585228-61585815 (-)
AKR/J	ENSMUSG00220022886	pseudogene	Chr18:61549034-61549621 (-)
BALB/cJ	ENSMUSG00180012819	pseudogene	Chr18:62152170-62152757 (-)
C3H/HeJ	ENSMUSG00175010427	pseudogene	Chr18:61756624-61757211 (-)
C57BL/6NJ	ENSMUSG00215019657	pseudogene	Chr18:61091838-61092425 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015671	pseudogene	Chr18:60751146-60751745 (-)
CBA/J	ENSMUSG00210031883	pseudogene	Chr18:61714612-61715199 (-)
DBA/2J	ENSMUSG00185029927	pseudogene	Chr18:61619272-61619859 (-)
FVB/NJ	ENSMUSG00205013597	pseudogene	Chr18:61090870-61091457 (-)
JF1/MsJ	ENSUMUG00000042268	pseudogene	Chr18:61504301-61504899 (-)
LP/J	ENSMUSG00230040453	pseudogene	Chr18:63673751-63674338 (-)
NOD/ShiLtJ	ENSMUSG00190008658	pseudogene	Chr18:61347986-61348573 (-)
NZO/HlLtJ	ENSMUSG00225030963	pseudogene	Chr18:63564035-63564622 (-)
PWK/PhJ	ENSLUMG00010027222	pseudogene	Chr18:61913187-61913785 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005006634	pseudogene	Chr18:61149055-61149642 (-)

Homology

• Gene Tree
  Prdx1-ps
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000118022 (Evidence)
• NCBI Gene
  100416115

Representative Sequences			Length	Strain/Species
genomic	100416115	NCBI Gene Model | MGI Sequence Detail	578	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;