Gm17900 Pseudogene Detail

Summary

• Symbol
  Gm17900
• Name
  predicted gene, 17900

• Feature Type
  pseudogene
• IDs
  MGI:5010085
  NCBI Gene: 100416066
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:46358406-46359395 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 30.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010085	pseudogene	Chr16:46358198-46359395 (+)
129S1/SvImJ	ENSMUSG00200021631	pseudogene	Chr16:43244207-43245404 (+)
A/J	ENSMUSG00195003649	pseudogene	Chr16:42844301-42845498 (+)
AKR/J	ENSMUSG00220022932	pseudogene	Chr16:43203086-43204283 (+)
BALB/cJ	ENSMUSG00180029741	pseudogene	Chr16:43049197-43050394 (+)
C3H/HeJ	ENSMUSG00175026161	pseudogene	Chr16:43318282-43319478 (+)
C57BL/6NJ	ENSMUSG00215009351	pseudogene	Chr16:43142947-43144144 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012975	pseudogene	Chr16:43529087-43530287 (+)
CBA/J	ENSMUSG00210016930	pseudogene	Chr16:43340229-43341425 (+)
DBA/2J	ENSMUSG00185011108	pseudogene	Chr16:43228795-43229992 (+)
FVB/NJ	ENSMUSG00205012972	pseudogene	Chr16:43126157-43127354 (+)
JF1/MsJ	ENSUMUG00000030541	pseudogene	Chr16:43454085-43455281 (+)
LP/J	ENSMUSG00230029082	pseudogene	Chr16:45795289-45796486 (+)
NOD/ShiLtJ	ENSMUSG00190019308	pseudogene	Chr16:43239568-43240765 (+)
NZO/HlLtJ	ENSMUSG00225028845	pseudogene	Chr16:48887041-48888238 (+)
PWK/PhJ	ENSLUMG00010028737	pseudogene	Chr16:43323575-43324771 (+)
SPRET/EiJ	ENSMSPG00010007585	pseudogene	Chr16:43518564-43519761 (+)
WSB/EiJ	ENSIUOG00005013293	pseudogene	Chr16:43438344-43439541 (+)

Homology

• Gene Tree
  Gm17900
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116915 (Evidence)
• NCBI Gene
  100416066

Representative Sequences			Length	Strain/Species
genomic	100416066	NCBI Gene Model | MGI Sequence Detail	990	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;