Gm17875 Pseudogene Detail

Summary

• Symbol
  Gm17875
• Name
  predicted gene, 17875

• Feature Type
  pseudogene
• IDs
  MGI:5010060
  NCBI Gene: 100416022
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:65272171-65272777 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 35.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010060	pseudogene	Chr9:65272169-65273228 (+)
129S1/SvImJ	ENSMUSG00200044473	pseudogene	Chr9:62374045-62375100 (+)
A/J	ENSMUSG00195026646	pseudogene	Chr9:62099435-62100490 (+)
AKR/J	ENSMUSG00220041099	pseudogene	Chr9:62237811-62238870 (+)
BALB/cJ	ENSMUSG00180017747	pseudogene	Chr9:62226014-62227073 (+)
C3H/HeJ	ENSMUSG00175013022	pseudogene	Chr9:62233125-62234180 (+)
C57BL/6NJ	ENSMUSG00215034883	pseudogene	Chr9:62213068-62214127 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032061	pseudogene	Chr9:62124752-62125809 (+)
CBA/J	ENSMUSG00210014371	pseudogene	Chr9:62310360-62311419 (+)
DBA/2J	ENSMUSG00185035682	pseudogene	Chr9:62335931-62336990 (+)
FVB/NJ	ENSMUSG00205034964	pseudogene	Chr9:62661087-62662144 (+)
JF1/MsJ	ENSUMUG00000038091	pseudogene	Chr9:62398068-62399125 (+)
LP/J	ENSMUSG00230027440	pseudogene	Chr9:62573058-62574113 (+)
NOD/ShiLtJ	ENSMUSG00190023591	pseudogene	Chr9:62427496-62428551 (+)
NZO/HlLtJ	ENSMUSG00225046465	pseudogene	Chr9:62642502-62643561 (+)
PWK/PhJ	ENSLUMG00010026532	pseudogene	Chr9:62359495-62360543 (+)
SPRET/EiJ	ENSMSPG00010023142	pseudogene	Chr9:63422548-63423610 (+)
WSB/EiJ	ENSIUOG00005028708	pseudogene	Chr9:61818839-61819898 (+)

Homology

• Gene Tree
  Gm17875
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm17875
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111092 (Evidence)
• NCBI Gene
  100416022

Representative Sequences			Length	Strain/Species
genomic	100416022	NCBI Gene Model | MGI Sequence Detail	607	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;