Gm17870 Pseudogene Detail

Summary

• Symbol
  Gm17870
• Name
  predicted gene, 17870

• Feature Type
  pseudogene
• IDs
  MGI:5010055
  NCBI Gene: 100416012
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:99824482-99825639 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 51.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010055	pseudogene	Chr10:99824482-99825656 (+)
129S1/SvImJ	ENSMUSG00200020429	pseudogene	Chr10:96336813-96337986 (+)
A/J	ENSMUSG00195017050	pseudogene	Chr10:96767990-96769163 (+)
AKR/J	ENSMUSG00220026946	pseudogene	Chr10:96299010-96300186 (+)
BALB/cJ	ENSMUSG00180009950	pseudogene	Chr10:96775663-96776836 (+)
C3H/HeJ	ENSMUSG00175006152	pseudogene	Chr10:96657270-96658446 (+)
C57BL/6NJ	ENSMUSG00215007517	pseudogene	Chr10:96359226-96360399 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005970	pseudogene	Chr10:96018959-96020135 (+)
CBA/J	ENSMUSG00210023165	pseudogene	Chr10:96487146-96488322 (+)
DBA/2J	ENSMUSG00185019290	pseudogene	Chr10:96717725-96718898 (+)
FVB/NJ	ENSMUSG00205004207	pseudogene	Chr10:96396268-96397444 (+)
JF1/MsJ	ENSUMUG00000031171	pseudogene	Chr10:98126866-98128039 (+)
LP/J	ENSMUSG00230022892	pseudogene	Chr10:98636319-98637492 (+)
NOD/ShiLtJ	ENSMUSG00190027449	pseudogene	Chr10:96741650-96742826 (+)
NZO/HlLtJ	ENSMUSG00225040954	pseudogene	Chr10:102867299-102868472 (+)
PWK/PhJ	ENSLUMG00010006048	pseudogene	Chr10:96397702-96398879 (+)
SPRET/EiJ	ENSMSPG00010010731	pseudogene	Chr10:98129797-98130978 (+)
WSB/EiJ	ENSIUOG00005013906	pseudogene	Chr10:96464779-96465955 (+)

Homology

• Gene Tree
  Gm17870
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm17870
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112299 (Evidence)
• NCBI Gene
  100416012

Representative Sequences			Length	Strain/Species
genomic	100416012	NCBI Gene Model | MGI Sequence Detail	1158	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87