Gm17828 Pseudogene Detail

Summary

• Symbol
  Gm17828
• Name
  predicted gene, 17828

• Feature Type
  pseudogene
• IDs
  MGI:5010013
  NCBI Gene: 100384882
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:72199824-72200622 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 40.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010013	pseudogene	Chr9:72199824-72200644 (-)
129S1/SvImJ	ENSMUSG00200043584	pseudogene	Chr9:69254191-69254989 (-)
A/J	ENSMUSG00195027033	pseudogene	Chr9:69051016-69051814 (-)
AKR/J	ENSMUSG00220042613	pseudogene	Chr9:69216271-69217069 (-)
BALB/cJ	ENSMUSG00180019662	pseudogene	Chr9:69165379-69166177 (-)
C3H/HeJ	ENSMUSG00175013080	pseudogene	Chr9:69178559-69179357 (-)
C57BL/6NJ	ENSMUSG00215037271	pseudogene	Chr9:69146867-69147665 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210014503	pseudogene	Chr9:69259135-69259933 (-)
DBA/2J	ENSMUSG00185035614	pseudogene	Chr9:69282984-69283782 (-)
FVB/NJ	ENSMUSG00205039403	pseudogene	Chr9:69556368-69557166 (-)
JF1/MsJ	ENSUMUG00000039012	pseudogene	Chr9:69319479-69320267 (-)
LP/J	ENSMUSG00230027855	pseudogene	Chr9:69449192-69449990 (-)
NOD/ShiLtJ	ENSMUSG00190024050	pseudogene	Chr9:69387041-69387839 (-)
NZO/HlLtJ	ENSMUSG00225046900	pseudogene	Chr9:69589576-69590374 (-)
PWK/PhJ	ENSLUMG00010028266	pseudogene	Chr9:69244224-69245012 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005027213	pseudogene	Chr9:68753557-68754355 (-)

Homology

• Gene Tree
  Gm17828
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm17828
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000098893 (Evidence)
• NCBI Gene
  100384882

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098893	Ensembl Gene Model | MGI Sequence Detail	799	C57BL/6J
transcript	ENSMUST00000183380	Ensembl | MGI Sequence Detail	799	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;