Gm17816 Pseudogene Detail

Summary

• Symbol
  Gm17816
• Name
  predicted gene, 17816

• Feature Type
  pseudogene
• IDs
  MGI:5010001
  NCBI Gene: 100306970
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:4275785-4278401 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 2.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010001	pseudogene	Chr12:4275711-4278508 (+)
129S1/SvImJ	ENSMUSG00200023816	pseudogene	Chr12:1235263-1237879 (+)
A/J	ENSMUSG00195017377	pseudogene	Chr12:1262964-1265580 (+)
AKR/J	ENSMUSG00220033263	pseudogene	Chr12:1260524-1263140 (+)
BALB/cJ	ENSMUSG00180015732	pseudogene	Chr12:1259432-1262048 (+)
C3H/HeJ	ENSMUSG00175009822	pseudogene	Chr12:1243364-1245980 (+)
C57BL/6NJ	ENSMUSG00215022122	pseudogene	Chr12:1190077-1192693 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023724	pseudogene	Chr12:1066561-1069169 (+)
CBA/J	ENSMUSG00210013662	pseudogene	Chr12:1263101-1265717 (+)
DBA/2J	ENSMUSG00185022141	pseudogene	Chr12:1242241-1244857 (+)
FVB/NJ	ENSMUSG00205003717	pseudogene	Chr12:1039919-1042535 (+)
JF1/MsJ	ENSUMUG00000036730	pseudogene	Chr12:1229032-1231647 (+)
LP/J	ENSMUSG00230011979	pseudogene	Chr12:3070346-3072962 (+)
NOD/ShiLtJ	ENSMUSG00190008247	pseudogene	Chr12:2482029-2484645 (+)
NZO/HlLtJ	ENSMUSG00225019932	pseudogene	Chr12:5128086-5130702 (+)
PWK/PhJ	ENSLUMG00010016995	pseudogene	Chr12:1051341-1053956 (+)
SPRET/EiJ	ENSMSPG00010005331	pseudogene	Chr12:1448479-1451065 (+)
WSB/EiJ	ENSIUOG00005002317	pseudogene	Chr12:1244451-1247067 (+)

Homology

• Gene Tree
  Gm17816
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112297 (Evidence)
• NCBI Gene
  100306970

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112297	Ensembl Gene Model | MGI Sequence Detail	2617	C57BL/6J
transcript	ENSMUST00000219991	Ensembl | MGI Sequence Detail	2603	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm17816:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112550	Chr12:4275721-4275730 (+)	-59 bp
Tssr112551	Chr12:4277566-4277574 (+)	1,785 bp