Gm17811 Pseudogene Detail

Summary

• Symbol
  Gm17811
• Name
  predicted gene, 17811

• Feature Type
  pseudogene
• IDs
  MGI:5009996
  NCBI Gene: 100302649
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:73280760-73281146 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 45.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009996	pseudogene	Chr11:73280655-73281753 (+)
129S1/SvImJ	ENSMUSG00200050576	pseudogene	Chr11:70323627-70324013 (+)
A/J	ENSMUSG00195052897	pseudogene	Chr11:70255037-70255423 (+)
AKR/J	ENSMUSG00220054240	pseudogene	Chr11:70499685-70500071 (+)
BALB/cJ	ENSMUSG00180054108	pseudogene	Chr11:70421318-70421704 (+)
C3H/HeJ	ENSMUSG00175054457	pseudogene	Chr11:70368554-70368940 (+)
C57BL/6NJ	ENSMUSG00215055090	pseudogene	Chr11:70051529-70051915 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053722	pseudogene	Chr11:69925145-69925531 (+)
CBA/J	ENSMUSG00210054438	pseudogene	Chr11:70222539-70222925 (+)
DBA/2J	ENSMUSG00185056910	pseudogene	Chr11:70504053-70504439 (+)
FVB/NJ	ENSMUSG00205054023	pseudogene	Chr11:70340398-70340784 (+)
JF1/MsJ	ENSUMUG00000052441	pseudogene	Chr11:70894719-70895105 (+)
LP/J	ENSMUSG00230049908	pseudogene	Chr11:71534630-71535016 (+)
NOD/ShiLtJ	ENSMUSG00190054277	pseudogene	Chr11:70495580-70495966 (+)
NZO/HlLtJ	ENSMUSG00225039619	pseudogene	Chr11:73717427-73717813 (+)
PWK/PhJ	ENSLUMG00010053587	pseudogene	Chr11:70391295-70391681 (+)
SPRET/EiJ	ENSMSPG00010049775	pseudogene	Chr11:70938061-70938447 (+)
WSB/EiJ	ENSIUOG00005052743	pseudogene	Chr11:70448480-70448866 (+)

Homology

• Gene Tree
  Gm17811
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm17811
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108577 (Evidence)
• NCBI Gene
  100302649

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108577	Ensembl Gene Model | MGI Sequence Detail	387	C57BL/6J
transcript	ENSMUST00000206193	Ensembl | MGI Sequence Detail	387	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:34487 Classon BJ, et al., Genomic organization and expression of mouse thymic shared antigen-1 (TSA-1): evidence for a processed pseudogene. Immunogenetics. 1996;44(3):222-6

TSS for Gm17811:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102896	Chr11:73280647-73280657 (+)	-108 bp
Tssr102897	Chr11:73280925-73280927 (+)	166 bp