Gm17802 Pseudogene Detail

Summary

• Symbol
  Gm17802
• Name
  predicted gene, 17802

• Feature Type
  pseudogene
• IDs
  MGI:5009988
  NCBI Gene: 100286833
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:12250375-12251974 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 8.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009988	pseudogene	Chr19:12250375-12252521 (+)
129S1/SvImJ	ENSMUSG00200053138	pseudogene	Chr19:8940936-8942535 (+)
A/J	ENSMUSG00195054118	pseudogene	Chr19:9084383-9085562 (+)
AKR/J	ENSMUSG00220051321	pseudogene	Chr19:9049333-9050932 (+)
BALB/cJ	ENSMUSG00180052540	pseudogene	Chr19:9448960-9450139 (+)
C3H/HeJ	ENSMUSG00175014903	pseudogene	Chr19:8789185-8790784 (+)
C57BL/6NJ	ENSMUSG00215048193	pseudogene	Chr19:8851467-8853066 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043667	pseudogene	Chr19:8644978-8646191 (+)
CBA/J	ENSMUSG00210050611	pseudogene	Chr19:8987695-8989294 (+)
DBA/2J	ENSMUSG00185052888	pseudogene	Chr19:9397710-9399309 (+)
FVB/NJ	ENSMUSG00205053108	pseudogene	Chr19:8856038-8857251 (+)
JF1/MsJ	ENSUMUG00000056489	pseudogene	Chr19:9496427-9497648 (+)
LP/J	ENSMUSG00230021259	pseudogene	Chr19:10308641-10310240 (+)
NOD/ShiLtJ	ENSMUSG00190053396	pseudogene	Chr19:8546975-8548154 (+)
NZO/HlLtJ	ENSMUSG00225046344	pseudogene	Chr19:14017628-14019227 (+)
PWK/PhJ	ENSLUMG00010009363	pseudogene	Chr19:8887445-8888658 (+)
SPRET/EiJ	ENSMSPG00010051683	pseudogene	Chr19:8722275-8723493 (+)
WSB/EiJ	ENSIUOG00005051544	pseudogene	Chr19:8508666-8509845 (+)

Homology

• Gene Tree
  Gm17802
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118093 (Evidence)
• NCBI Gene
  100286833

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118093	Ensembl Gene Model | MGI Sequence Detail	1600	C57BL/6J
transcript	ENSMUST00000235219	Ensembl | MGI Sequence Detail	1349	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;