Gm17796 Pseudogene Detail

Summary

• Symbol
  Gm17796
• Name
  predicted gene, 17796

• Feature Type
  pseudogene
• IDs
  MGI:5009982
  NCBI Gene: 100134981
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:131144614-131145826 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 56.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009982	pseudogene	Chr1:131144569-131146120 (+)
129S1/SvImJ	ENSMUSG00200009405	pseudogene	Chr1:128720571-128721745 (+)
A/J	ENSMUSG00195046094	pseudogene	Chr1:127807037-127808249 (+)
AKR/J	ENSMUSG00220050782	pseudogene	Chr1:127652695-127653907 (+)
BALB/cJ	ENSMUSG00180040873	pseudogene	Chr1:128375169-128376343 (+)
C3H/HeJ	ENSMUSG00175047195	pseudogene	Chr1:128051753-128052965 (+)
C57BL/6NJ	ENSMUSG00215046123	pseudogene	Chr1:128067440-128068652 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009270	pseudogene	Chr1:122801203-122802452 (+)
CAST/EiJ	ENSTCUG00005039805	pseudogene	Chr1:126990352-126991565 (+)
CBA/J	ENSMUSG00210028839	pseudogene	Chr1:127969982-127971194 (+)
DBA/2J	ENSMUSG00185034601	pseudogene	Chr1:132319423-132320597 (+)
FVB/NJ	ENSMUSG00205046200	pseudogene	Chr1:127306383-127307557 (+)
JF1/MsJ	ENSUMUG00000003385	pseudogene	Chr1:131491467-131492679 (+)
LP/J	ENSMUSG00230001425	pseudogene	Chr1:131898738-131899912 (+)
NOD/ShiLtJ	ENSMUSG00190046847	pseudogene	Chr1:127961662-127962874 (+)
NZO/HlLtJ	ENSMUSG00225021444	pseudogene	Chr1:135635563-135636737 (+)
PWK/PhJ	ENSLUMG00010029466	pseudogene	Chr1:127097651-127098863 (+)
SPRET/EiJ	ENSMSPG00010046799	pseudogene	Chr1:129897762-129899002 (+)
WSB/EiJ	ENSIUOG00005048811	pseudogene	Chr1:127715092-127716304 (+)

Homology

• Gene Tree
  Gm17796
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm17796
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000101729 (Evidence)
• NCBI Gene
  100134981

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101729	Ensembl Gene Model | MGI Sequence Detail	1213	C57BL/6J
transcript	ENSMUST00000189015	Ensembl | MGI Sequence Detail	1213	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45