Trav3-2 Pseudogene Detail

Summary

• Symbol
  Trav3-2
• Name
  T cell receptor alpha variable 3-2

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009976
  NCBI Gene: 100126470
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:53823957-53824421 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009976	pseudogenic gene segment	Chr14:53823928-53824421 (+)
129S1/SvImJ	ENSMUSG00200043289	pseudogenic gene segment	Chr14:42360448-42360890 (+)
A/J	ENSMUSG00195025481	pseudogenic gene segment	Chr14:42158658-42159100 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180052814	pseudogenic gene segment	Chr14:42208017-42208484 (+)
BALB/cJ	ENSMUSG00180052810	pseudogenic gene segment	Chr14:41781091-41781533 (+)
C3H/HeJ	ENSMUSG00175052048	pseudogenic gene segment	Chr14:43890471-43890938 (+)
C3H/HeJ	ENSMUSG00175052044	pseudogenic gene segment	Chr14:43463586-43464028 (+)
C57BL/6NJ	ENSMUSG00215049218	pseudogenic gene segment	Chr14:42146500-42146964 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049454	pseudogenic gene segment	Chr14:43957990-43958457 (+)
CBA/J	ENSMUSG00210047228	pseudogenic gene segment	Chr14:42136854-42137296 (+)
DBA/2J	ENSMUSG00185055960	pseudogenic gene segment	Chr14:47654067-47654534 (+)
FVB/NJ	ENSMUSG00205048494	pseudogenic gene segment	Chr14:41475368-41475810 (+)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190047152	pseudogenic gene segment	Chr14:41822771-41823213 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010048967	pseudogenic gene segment	Chr14:41776714-41777181 (+)
PWK/PhJ	ENSLUMG00010048944	pseudogenic gene segment	Chr14:41349898-41350340 (+)
SPRET/EiJ	ENSMSPG00010047364	pseudogenic gene segment	Chr14:45201575-45202041 (+)
WSB/EiJ	ENSIUOG00005043158	pseudogenic gene segment	Chr14:41826274-41826741 (+)

Homology

• Gene Tree
  Trav3-2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav3-2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000104738 (Evidence)
• NCBI Gene
  100126470

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104738	Ensembl Gene Model | MGI Sequence Detail	465	C57BL/6J
transcript	ENSMUST00000198999	Ensembl | MGI Sequence Detail	305	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;