Trav5n-2 Pseudogene Detail

Summary

• Symbol
  Trav5n-2
• Name
  T cell receptor alpha variable 5N-2

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009974
  NCBI Gene: 100126454
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:53462859-53463133 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009974	pseudogenic gene segment	Chr14:53462850-53463133 (+)
129S1/SvImJ	ENSMUSG00200042232	pseudogenic gene segment	Chr14:42400306-42400585 (+)
A/J	ENSMUSG00195025808	pseudogenic gene segment	Chr14:42185493-42185767 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180051894	pseudogenic gene segment	Chr14:41807930-41808204 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210045390	pseudogenic gene segment	Chr14:42163680-42163954 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010047835	pseudogenic gene segment	Chr14:41376727-41377001 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005047791	pseudogenic gene segment	Chr14:41853612-41853891 (+)

Homology

• Gene Tree
  Trav5n-2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav5n-2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000105956 (Evidence)
• NCBI Gene
  100126454

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105956	Ensembl Gene Model | MGI Sequence Detail	275	C57BL/6J
transcript	ENSMUST00000197136	Ensembl | MGI Sequence Detail	275	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;